View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_11 (Length: 529)
Name: NF18071_low_11
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 2 - 511
Target Start/End: Original strand, 4813880 - 4814390
Alignment:
| Q |
2 |
gaagggtaaacatctctcattatcctataatgacaattacaatccttaagttttgtatggagggaatttaaaaaattcagcgagatcagtagaaggcaac |
101 |
Q |
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| T |
4813880 |
gaagggtaaacatctctcattatcctataatgacaattacaatccttaagttttgtatggagggaatttaaaaaattcagcgagatcagtagaaggcaac |
4813979 |
T |
|
| Q |
102 |
ttgtgcattgggttcctttggcttcaaagactaaacattatgaatgacattaaattaaaatttatcttagggactttattatggagataaatcacttttg |
201 |
Q |
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| T |
4813980 |
ttgtgcattgggttcctttggcttcaaagactaaacattatgaatgacattaaattaaaatttatcttagggagtttattatggagataaatcacttttg |
4814079 |
T |
|
| Q |
202 |
gctgaatgtggttcatagtgatggtcgagctaaatagtagtagatgatgatacatatggtgaagaaagaattgaaatgnnnnnnnnnnnnnnnnntgtgg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
4814080 |
gctgaatgtggttcatagtgatggtcgagctaaatagtagtagatgatgataaatatggtgaagaaagaattgaaatgaaaaaataaataaaaaatgtgg |
4814179 |
T |
|
| Q |
302 |
taacaaatatggaagaatgtagaagtagcttaacttgaaatgtaacttgtgtaaaagaaatattgtgc-nnnnnnnnnnnaaaaggagaaatattgtaca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4814180 |
taacaaatatggaagaatgtagaagtagcttaacttgaaatgtaacttgtgtaaaagaaatattgtgcttttttttttttaaaaggagaaatattgtaca |
4814279 |
T |
|
| Q |
401 |
tgtaagtgaaaaatgttgatttgatataatattcaaaagtaactataatgaccaaaatatacgaaagaacaatattgaattgttgagagtaatacaatgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4814280 |
tgtaagtgaaaaatgttgatttgatataatattcaaaagtaactataatgaccaaaatatacgaaagaacaatattgaattgttgagagtaatacaatgt |
4814379 |
T |
|
| Q |
501 |
aatgtaataat |
511 |
Q |
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| T |
4814380 |
aatgtaataat |
4814390 |
T |
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