View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_111 (Length: 210)
Name: NF18071_low_111
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_111 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 2369109 - 2369282
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369109 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
2369208 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtgatct |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369209 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtgatct |
2369282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 2363363 - 2363533
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
2363363 |
caaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaagca |
2363462 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtga |
189 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
2363463 |
acaccaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtga |
2363533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 2307598 - 2307769
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
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|||||| ||||||| | | | ||||||||||||||||||||||| ||| |||||||| | ||||| | ||||||||| |||| | ||||||||||| | |
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| T |
2307598 |
caaatgctgcatttcattctagctagttttttgcattcctttgatatcttaaatccaacccctgaacttgttgatatgagtgaatcctttggattaacaa |
2307697 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtgat |
190 |
Q |
| |
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|||| ||| | ||||||||| ||||||| ||||| |||| ||||||| ||||| |||||||| ||||||| |
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| T |
2307698 |
acactaaagctactcctcttaagattctcattaaaccacatttgtctatcaattgttatgaaatcatgtgat |
2307769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 2340279 - 2340450
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
| |
|
|||||| ||||||| || | ||||||||||||||||||||||| ||| |||||||| || ||| || ||||||||| |||| | ||||||| ||| | |
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| T |
2340279 |
caaatgctgcatttcaccctagctagttttttgcattcctttgatatcttaaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacga |
2340378 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtgat |
190 |
Q |
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| ||||| | ||||| ||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| |
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| T |
2340379 |
attccaaagctactccacttgagattctcattaaaccacgtttgtctcacaattgttatgagtttatgtgat |
2340450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 2261235 - 2261160
Alignment:
| Q |
28 |
catttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaa |
103 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||| |||||| ||| ||||||||| ||||||||||||||| |
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| T |
2261235 |
catttaactttggctaattttttacactcctttgaaattgtaaatggatctagtgaacctgttgatatgactgaaa |
2261160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 2351732 - 2351870
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
| |
|
||||| |||||||| ||| | || |||||||||||||||||||| ||| |||||||| || | || | |||||||||||||| ||||||||| | | |
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| T |
2351732 |
caaattgtgcatttcactctagcaagttttttgcattcctttgatatcttaaatccaacacccggacttgttgatatgactgaagaatttggattagcaa |
2351831 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccac |
157 |
Q |
| |
|
|||||||| | ||||| ||||||||||| ||||| |||| |
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| T |
2351832 |
acaccaaagctactccacttgagattctcattaaaccac |
2351870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 2358049 - 2358216
Alignment:
| Q |
20 |
aaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaa |
119 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||| ||||||||| | || |||| ||||| |||||||||||||| ||| |||||||| || |
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| T |
2358049 |
aaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggt |
2358148 |
T |
|
| Q |
120 |
caccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgt |
187 |
Q |
| |
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| ||||| | || || ||||||||||| |||| ||| |||||||| |||||||| |||| ||||| |
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|
| T |
2358149 |
ctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgt |
2358216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 4306061 - 4306222
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||| | |||| |
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| T |
4306061 |
caaatggtgcatttatctttggctagttttttgcattcctttgaaatctcaaaggcatcagctgaacctattgatatgactgaagcttttggaatcacca |
4306160 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaa |
180 |
Q |
| |
|
|| ||| ||||||| || ||||||||||||||||| |||||| |||| ||||| |||||| |
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|
| T |
4306161 |
accacaaggcaactccactagagattcttattaagcctcgtttgccttctaattgttatgaa |
4306222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 5804205 - 5804059
Alignment:
| Q |
19 |
caaatggtgcatttaactttggctagttttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaacca |
118 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||||| ||||||||||| | |
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|
| T |
5804205 |
caaatggtgcattttactctagctagttttttgcattcctttgatatcttaaatccaacacctgaacttattgatatgactgaagaatttggattaacaa |
5804106 |
T |
|
| Q |
119 |
acaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
165 |
Q |
| |
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| | |||| | ||||| ||||| ||||| ||||| |||||||||||| |
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|
| T |
5804105 |
atagcaaagctactccacttgaaattctcattaaaccacgtttgtct |
5804059 |
T |
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