View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_12 (Length: 507)
Name: NF18071_low_12
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 44677641 - 44677390
Alignment:
| Q |
17 |
agattctactaatggtatgtttgttttcgcgttgaagattgaccaaacgtatgccagtgaagcttcaacagcttctatattttcacgttgtaacaacttt |
116 |
Q |
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| T |
44677641 |
agattctactaatggtgtgttcgttttcgcgttgaagagtgaccaaacgtatgccaatgaagcttcaacagcttctatattttcacgttgtaacaacttt |
44677542 |
T |
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| Q |
117 |
gcgacacaagaattttgtcgcagctgctgttctagacattagaattaagtgatgaattttgatgataatgtcaaaagcaatgaagtattgatggaccata |
216 |
Q |
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| T |
44677541 |
gcgacagtagaattttgtcgcatctgctgttctagacattagaattaagtgatgaattttgatgataatgtcaaaagcaatgaagtattgatggaccata |
44677442 |
T |
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| Q |
217 |
catctctggttgaagaaagttgattttgtatatttaaccacttcctatcaat |
268 |
Q |
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| T |
44677441 |
catctctggttgaagaaagttgattttgtatatttaaccacttcctatcaat |
44677390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 252 - 493
Target Start/End: Complemental strand, 44677369 - 44677126
Alignment:
| Q |
252 |
aaccacttcctatcaattcaacccccatattttaa------attttcaatttggtacttaaatttattcacttacaattaattttagtcactggcatatt |
345 |
Q |
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| T |
44677369 |
aaccacttcctatcaattcaacccc-atattttaacaacttattttcaatttggtacttaaatttattcacttacaattaattt-attcactgacatatt |
44677272 |
T |
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| Q |
346 |
tttaaaggattaatatcaataaaatttaaaagagtcaatgaccaatttttgaaatattcgtaaagttggggatctatttaagatctatctaaagagttat |
445 |
Q |
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| T |
44677271 |
tttaaaggattaatatcaataaaatttaaaagagtcaatgacc--tttttgaaatattcataaagttgggaatctatttaagatctatctaaagagtcat |
44677174 |
T |
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| Q |
446 |
aaactaattttgatagtttaatcttgactaaattgcatatttgttacc |
493 |
Q |
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| T |
44677173 |
aaactaattttgatagtttaattttggctaaattgcatatttgttacc |
44677126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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