View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_low_13 (Length: 493)
Name: NF18071_low_13
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 21844514 - 21844042
Alignment:
| Q |
1 |
tgtgacagtaatgtcttgaggtaaggtttgtatcgttcattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttaaatttcaaccactagt |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21844514 |
tgtgacagtagtgtcttgaggtagggtttgtatcgtccattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttcaatttcaaccactagt |
21844415 |
T |
|
| Q |
101 |
attataaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctaattttagctataactatgcaaatatcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21844414 |
attataaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctatttttagctataactatgcaaatatcac |
21844315 |
T |
|
| Q |
201 |
ccaatannnnnnnnn-aaggaaaattatcaccaaatatatatttcgttnnnnnnnntatcattcaatatatattgcaaaaaccaccatctttttcctcaa |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21844314 |
ccaatattttttttttaaggaaaattatcaccaaatatatatttcgttaaaaat--tatcattcaatatatattgcaaaaaccaccatcttttccctcaa |
21844217 |
T |
|
| Q |
300 |
aggaaagaaaaacccaccatctttagtgcaataaaatgtacaatctataatggtttcaaaaataaaatgaacaattgaaata-ttttgtattcatatcat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
21844216 |
aggaaagaaaaacccaccatctttagtgcaataaaatgtacaatatataatggttccaaatataaaatgcacaattgaaatacttttgtattcatatcat |
21844117 |
T |
|
| Q |
399 |
ttaatcaatacaagtaattattcgaattcgacttctatatgaacattcacacacaccccattttgaacctcgtag |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21844116 |
ttaatcaatacaagtaattattcgaattcgacttctatatgaacattcacacacaccccattttgaacctcgtag |
21844042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University