View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_14 (Length: 485)
Name: NF18071_low_14
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 45280446 - 45279956
Alignment:
| Q |
1 |
ggaaaatggataaagctatgactaaacttggaagcttttggatctccaagaaagccaaggaagagatttcccacataaccaacgacttatctgtgagtct |
100 |
Q |
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| T |
45280446 |
ggaaaatggataaagctatgactaaacttggaagcttttggatctccaagaaagccaaggaagagatttcccacataaccaacgacttatctgtgagcct |
45280347 |
T |
|
| Q |
101 |
cttatttctttttcatttgttcaagaccatatttaactcttaaannnnnnnattgtttctgagttatgtctattttggataaatgacttctaaaatacta |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
45280346 |
cttacttctttttcatttgttcaagaccatatttaaatcttaaatttttt-attgttt--gagttatgtctattttggataaatggcttctaaaatacta |
45280250 |
T |
|
| Q |
201 |
agaatataagatttgataatagaagtagcagagtcttatgttcttggaatcttgaatatgactagagtcacaaaattatgtcctatataccttggaagta |
300 |
Q |
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| T |
45280249 |
agaatataagatttgataatagaagtagcagagtcttatgttcttggaatcttgaatatgactagagtcacaaaattatgtcctatataccttggaagta |
45280150 |
T |
|
| Q |
301 |
tataaaatgatcattatgaaaaataaaccaaaatgatcagtatgaacttttactcttactgttaa----ttaacctttgtt------------------- |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45280149 |
tataaaatgatcattatgaaaaataaaccaaaatgatcagtatgaacttttactcttactgttaattaattaacctttgttttatgttaatgcgaattgt |
45280050 |
T |
|
| Q |
378 |
-ttgttgcaaacataaatttatgtacaagaatacttatatatctattttcaatttcagtctctctcaaatagtgttgaagacaaggcgaaactt |
470 |
Q |
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| T |
45280049 |
tttgttgcaaacataaatttatgtacaagaatacttatatatctattttcaatttcagtctctctcaaatagtgttgaagacaaggcgaaactt |
45279956 |
T |
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