View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_17 (Length: 464)
Name: NF18071_low_17
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 35563096 - 35562662
Alignment:
| Q |
13 |
aatattgctgggtaccagggaaccttaacaagacggagtgtgtcggttggtagtccttcttacgacttcatttcatttcatttcattaatctaatactcc |
112 |
Q |
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| T |
35563096 |
aatattgctgggtaccagggaaccttaacaagacggagtgtgtcggttggtagtacttcttacaacttcatttcatttcatt-----aatctaatactcc |
35563002 |
T |
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| Q |
113 |
tatataattcaacttttagttccattctattaattaatataattgcagctaaaaagtacaaaatgtttaactgtaaacgaaccttggtggcttaatctca |
212 |
Q |
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| T |
35563001 |
tatataattcaacttttagttccattctattaattaatataattgcaactacaaagtacaaaatgtttaactgtaaacgaaccttggtggcttaatctca |
35562902 |
T |
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| Q |
213 |
gtttgatacactgaacctgaagattgcaatctaactcttcactctctaattgttcataaaccatattcaatgaatgaatggaatgga-----ttnnnnnn |
307 |
Q |
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| T |
35562901 |
gtttgatacactgaacctgaagattgcaatctaactcttcactctctaattgttcataaaccatattcaatgaatgaatggaatggaatggattaaaaaa |
35562802 |
T |
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| Q |
308 |
ngttatattttgttcctttaaaattgggtatatacgtatataatgatcaaagttgtagaccaaataattactcaattagtcttcttgaaaactcttttgc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35562801 |
agttatattttgttcctttaaaattgggtatatacgtatataatgatcaaagttgtagaccaaataattactcaattagtcttcttgaaaactcttttgc |
35562702 |
T |
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| Q |
408 |
ttgcttatgcaattactgtccctgccttatctccggggac |
447 |
Q |
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| T |
35562701 |
ttgcttatgcaattactgtccctgccttatctccggggac |
35562662 |
T |
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