View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_20 (Length: 447)
Name: NF18071_low_20
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 45178336 - 45178074
Alignment:
| Q |
20 |
cttgtaatagcaggaggcaattatagaggccactgacgacacaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaa-gctaac |
118 |
Q |
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| T |
45178336 |
cttgtaatagcaggaggcaattatagaggccaatgacgacacaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaaagctaac |
45178237 |
T |
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| Q |
119 |
ttataattccttgtcacaaactgtcattttgcattagtgccgtagttctgcattgggaggtatttttgagcgtaccgaaacgcattgatattatta---- |
214 |
Q |
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| T |
45178236 |
ttataattccttgtcacaaactgtcattttgtattagtgccgtagttctgcattaggaggtatttttgagcgtaccgaaacgcattgatattattattat |
45178137 |
T |
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| Q |
215 |
-----ttatgaaacaaagatgaacagtcacggca-tttccttttccccctttgtttgtgttga |
271 |
Q |
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| T |
45178136 |
tattattatgaaacaaggatgaacagtcacggcattttccttttccccctttgtttgtgttga |
45178074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 45177906 - 45177843
Alignment:
| Q |
372 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
435 |
Q |
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| T |
45177906 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
45177843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 45178046 - 45178009
Alignment:
| Q |
338 |
aacttgctaaaatgcacattttggtattggcaaaagca |
375 |
Q |
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| T |
45178046 |
aacttgctaaaatgcacattttggtattggcaaaagca |
45178009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 311
Target Start/End: Complemental strand, 5904916 - 5904885
Alignment:
| Q |
280 |
aaagtgtgatttatttttataggaccaaaaat |
311 |
Q |
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| T |
5904916 |
aaagtgtgatttatttttataggaccaaaaat |
5904885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 19928034 - 19927993
Alignment:
| Q |
280 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaat |
320 |
Q |
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| T |
19928034 |
aaagtgtgatttatttttatagggaccaaaaacttaattaat |
19927993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 10895594 - 10895549
Alignment:
| Q |
280 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaatcctt |
324 |
Q |
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| T |
10895594 |
aaagtgtgatttatttttatagggaccaaaaacttaattaaccctt |
10895549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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