View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_22 (Length: 443)
Name: NF18071_low_22
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 24479346 - 24478933
Alignment:
| Q |
14 |
agaggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacct |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479346 |
agaggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacct |
24479247 |
T |
|
| Q |
114 |
gagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaaatccaacatagagataaaatagttagtgatagtttctcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479246 |
gagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaaatccaacatagagataaaatagttagtgatagtttctcc |
24479147 |
T |
|
| Q |
214 |
ttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattgcagtcagtggatgatagagatcttaccggcggtaagatctcac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
24479146 |
ttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattgaagtcagtggatgatagagatcttaccggtggtaagacctcac |
24479047 |
T |
|
| Q |
314 |
ttccgttaagctcaactgaggaagacatggaacttgtttgctcagtcaacaattttttaactgctagttgtaattatcttctaagacccgttattcccat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||| |||||| || ||| |||||| |||||||||| |
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| T |
24479046 |
ttccgttaagctcaactgaggaagacatggaacttgttcgatcattcgacaattttttaactgctagatgtaatcatattccaagacctattattcccat |
24478947 |
T |
|
| Q |
414 |
tggacctaggtttc |
427 |
Q |
| |
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|||||||||||||| |
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| T |
24478946 |
tggacctaggtttc |
24478933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 71 - 427
Target Start/End: Original strand, 24693804 - 24694163
Alignment:
| Q |
71 |
aaggagaatattgtgctacttgtacagaagactattctcacctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagctt |
170 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||| | | ||||||||||||| |
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| T |
24693804 |
aaggagaatattgtgaaacctgtacagaagactattctcacctgagtgaatctgaagattctattaaggttttgagttaccctatgcatcaagggagctt |
24693903 |
T |
|
| Q |
171 |
gaaaatccaacatagagataaaatagttagtgatagtttctccttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattg |
270 |
Q |
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| ||| ||||| ||||||| ||| ||| || ||||||||||||| |||||| |||||||||| ||||||||||| ||| ||||||| ||||||||| |
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| T |
24693904 |
ggaaaaccaacctagagatttaatggttggtaatagtttctccttcagtaccaaaccatcattaaatgataaaccaaatatatactttgtgaaagcattg |
24694003 |
T |
|
| Q |
271 |
cagtcagtggatgatagagatcttaccggcggtaagatctcacttccgttaagctcaactgaggaag---acatggaacttgtttgctcagtcaacaatt |
367 |
Q |
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||||| ||| ||||| | || |||| | ||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
24694004 |
aagtcaatgggtgataaatattttactgatggtaagacctcacttcagttaagttcaactgaggaagaagacatggaacttgtttgctcactcaacaatt |
24694103 |
T |
|
| Q |
368 |
ttttaactgctagttgtaattatcttctaagacccgttattcccattggacctaggtttc |
427 |
Q |
| |
|
|||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
24694104 |
ttttaactcctaggtgtaatcatctactaagacccgttattcccattggacctaggtttc |
24694163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 24693579 - 24693698
Alignment:
| Q |
20 |
gtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacctgagtga |
119 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||| || ||||| ||||| | |||| || | |||| |
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| T |
24693579 |
gtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgtatggaagattgttcttacttatgtga |
24693678 |
T |
|
| Q |
120 |
atccaaagattctattaagg |
139 |
Q |
| |
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|||| ||||||||||||| |
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|
| T |
24693679 |
ccccaatgattctattaagg |
24693698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 49 - 427
Target Start/End: Complemental strand, 41369821 - 41369443
Alignment:
| Q |
49 |
atttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacctgagtgaatccaaagattctattaaggtgttgaata |
148 |
Q |
| |
|
||||||||| ||||| || | ||| ||||||||| ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||| | | |
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| T |
41369821 |
atttttcctgctctaaataacaaagaagaatattgcgctacctgtatggaagactattctcacctgagcgaatcggaagattctattaaggtgccaagtt |
41369722 |
T |
|
| Q |
149 |
accccaagtatcaagggagcttgaaaatccaacatagagataaaatagttagtgatagtttctccttaccaaccaaatcatcattaaaagataaaccaaa |
248 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| | |||| | |||||||||| ||||||| ||| |
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| T |
41369721 |
accctttgtatcaagggagcttgaaaattcaacatagagatttaatggttagtgatagtttctcctcaggcaccataccatcattaaatgataaacaaaa |
41369622 |
T |
|
| Q |
249 |
aatagactttgtaaaagcattgcagtcagtggatgatagagatcttaccggcggtaagatctcacttccgttaagctcaactgaggaagacatggaactt |
348 |
Q |
| |
|
||| |||||||| ||||||| | | | |||||||||||||||||||| ||| | | ||||||||||||||| |||||||||||||||||||| ||| |
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| T |
41369621 |
aattgactttgtggaagcattaaacttaatggatgatagagatcttaccaatggtgaaacctcacttccgttaagttcaactgaggaagacatggatctt |
41369522 |
T |
|
| Q |
349 |
gtttgctcagtcaacaattttttaactgctagttgtaattatcttctaagacccgttattcccattggacctaggtttc |
427 |
Q |
| |
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||| ||||| ||||||||||||| |||| || |||| |||||| |||||| ||||||||||||||||||| |||| |
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|
| T |
41369521 |
gttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaattattcccattggacctagatttc |
41369443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 41370028 - 41369851
Alignment:
| Q |
16 |
aggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacctga |
115 |
Q |
| |
|
||||||||||||| ||||| | |||| ||| ||||| |||||||||||||| | |||| |||||| |||| || ||||| ||||||| |||| |||| | |
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| T |
41370028 |
aggagtttatttttacaaggaacaaaggagtttattcttcctactctagataacgaagtagaatactgtggtatttgtatggaagactgttcttacctca |
41369929 |
T |
|
| Q |
116 |
gtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaaatccaacatagagataaaa |
193 |
Q |
| |
|
|| | |||| |||||| |||||| || | | |||||| | ||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
41369928 |
gttaccccaatgattctgttaaggggtcaagttaccccatgaatcaaaggagcatgaaaatccaagctagagataaaa |
41369851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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