View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_23 (Length: 442)
Name: NF18071_low_23
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 36 - 427
Target Start/End: Original strand, 114309 - 114682
Alignment:
| Q |
36 |
tggaaatttcaaatagtttaccaaactttcaagatcatcaattacctcctaaaataagcaatagtagtagatatgatgaaatatgtttaaaagaaagatt |
135 |
Q |
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| T |
114309 |
tggaaatttcaaatagtttaccaaactttcaagatcatcaattacctcctaaaataagcaatagtagtagatatgatgaaatatgtttaaaagaaagatt |
114408 |
T |
|
| Q |
136 |
aatgtcagaattattaggcaatgagggaggaataattaggagacaccaacgtacatattccgatagcatgctatctgagcagcaacagcaggaagtaccc |
235 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114409 |
aatgtcaga---attaggcaatgagggaggaata---aggagacaccaacgtacatattccgatagcatgctatctgagcagcaacagcaggaagtaccc |
114502 |
T |
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| Q |
236 |
tgttggttgaaagatctccttgatgatgatnnnnnnnnnnnnnnnnntcagaagcagcctagtactgtatgcagcaacaagactcatagaagatcatcaa |
335 |
Q |
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| T |
114503 |
tgttggttgaaagatctccttgatgatga------------agaagatcagaagcagcctagtactgtatgcagcaacaagactcatagaagatcatcaa |
114590 |
T |
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| Q |
336 |
gtgactccttagcatacttaaataataaaactattcttcaacattctccagaaatcaaggttgtagattcacaaccctcctttctacaacaa |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
114591 |
gtgactccttagcatacttaaataataaaactattcttcaacattctccagaaaggaaggttgtagattcacaaccctcctttctacaacaa |
114682 |
T |
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