View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_low_26 (Length: 422)

Name: NF18071_low_26
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_low_26
NF18071_low_26
[»] chr6 (2 HSPs)
chr6 (9-406)||(11390058-11390455)
chr6 (9-406)||(11420169-11420566)


Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 11390058 - 11390455
Alignment:
Q  9 aaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggttggagataaatacaaattcttggagtatttcttagggg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390058 aaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggttggagataaatacaaattcttggagtatttcttagggg 11390157  T
Q  109 tttctctattctgattataaatacacattcttattctccctttgattaccaataaccgatgtttacaccttttctttttctcgatcttgccttgtcaatc 208  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||    
T  11390158 tttctctattctgattataaacacacatttttattctccctttgattaccaaaaaacgatgtttacactttttctttttctcgatcttgccttgtcaatc 11390257  T
Q  209 tttttctcaatcatagtattttgtatttgtattcattataaagctgcaaaggaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390258 tttttctcaatcatagtattttgtatttgtattcattataaagctgcaaaggaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaag 11390357  T
Q  309 atgatttctataaatttcaccatcttgaagagtgtcaaattagcaccaatttatacggggcaaggataaattgtgaagaaagaaaattgttaatagat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  11390358 atgatttctataaatttcaccatcttgaagagtgtcaaattagcaccaatttatatggggtaaggataaattgtgacgaaagaaaattgttaatagat 11390455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 11420566 - 11420169
Alignment:
Q  9 aaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggttggagataaatacaaattcttggagtatttcttagggg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11420566 aaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgtgttggagataaatacaaattcttggagtatttcttagggg 11420467  T
Q  109 tttctctattctgattataaatacacattcttattctccctttgattaccaataaccgatgtttacaccttttctttttctcgatcttgccttgtcaatc 208  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||||||||    
T  11420466 tttttctattctgattataaatacacatttttattctccctttgattaccaaaaaacgatgtttacactttttctttttctctatcttgccttgtcaatc 11420367  T
Q  209 tttttctcaatcatagtattttgtatttgtattcattataaagctgcaaaggaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11420366 tttttctcaatcatagtattttgtatttgtattcattataaagctgcaaaggaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaag 11420267  T
Q  309 atgatttctataaatttcaccatcttgaagagtgtcaaattagcaccaatttatacggggcaaggataaattgtgaagaaagaaaattgttaatagat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||    
T  11420266 atgatttctataaatttcaccatcttgaagagtgtcaaattagcaccaatttatatggggtaaggataaattgtgatgaaagaaaatttttaatagat 11420169  T

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