View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_27 (Length: 421)
Name: NF18071_low_27
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 51 - 360
Target Start/End: Complemental strand, 39641154 - 39640846
Alignment:
| Q |
51 |
agcaagtagttcaaagtttggatattgatttttgtgcatgtaaaatgcctagttgagaggagaaaaccactataattccctgagattctttgaaaacagt |
150 |
Q |
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| T |
39641154 |
agcaagtagttcaaagtttggatattgatttttgtgcatgtaaaatgcctagttgagaggagaaaaccactataatgccctgagattctttgaaaacagt |
39641055 |
T |
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| Q |
151 |
ctctattgacaatgcaaaatactacactccttatgcaactcatgggccnnnnnnncattacacgtgatttgtgttaagtgatctaccacgtttacggact |
250 |
Q |
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| T |
39641054 |
ctctattgacaatgcaaaatactacactccttatgcaactcatgggccaaaaaaacattacacgtgatttgtgttaagtgatctaccacgtttacggact |
39640955 |
T |
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| Q |
251 |
attatgatcaatctcctattttggtgttaaccctttgannnnnnnaggagaaataccattgacaaatctagagttcgctcaggaaataagaaaaatttga |
350 |
Q |
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| T |
39640954 |
attatgatcaatctccaattttggtgttaaccctttga-ttttttaggagaaataccattgacaaatcttgagttcactcaggaaataagaaaaatttga |
39640856 |
T |
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| Q |
351 |
tcaaatatta |
360 |
Q |
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| T |
39640855 |
tcaaatatta |
39640846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 39640758 - 39640705
Alignment:
| Q |
358 |
ttagcaactaacccctacctagcggcatttggaccttaacgggatcggcctatg |
411 |
Q |
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| T |
39640758 |
ttagcaactaacccctacctagcggcatttggaccttaacggaatcggcctatg |
39640705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 39681227 - 39681291
Alignment:
| Q |
208 |
ttacacgtgatttgtgttaagtgatctaccacgtttacggactattatgatcaatctcctatttt |
272 |
Q |
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| T |
39681227 |
ttacacatgatttgtgttaactgatttaccacgtttgtggactattttgatcaaacttctatttt |
39681291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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