View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_low_29 (Length: 409)
Name: NF18071_low_29
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 2685942 - 2686324
Alignment:
| Q |
17 |
aaatctctggtaaaccatgataatcaattttgaatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2685942 |
aaatctctggtaaaccatgataatcaattttgaatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtt |
2686041 |
T |
|
| Q |
117 |
tttgtcgaagttccaaccgatattcatggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2686042 |
tttgtcgaagttccaaccgatattcatggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtt |
2686141 |
T |
|
| Q |
217 |
tctcttagaactaaatttccattatcgaaaagctgaagaacaagtgggttggtagcttttgtttgattcgaagaccatatgaggttgttgtctgaatctg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2686142 |
tctcttagaactaaatttccattatcgaaaagctgaagaacaagtgggttggtagcttttgtttgattggaagaccatatgaggttgttgtctgaatctg |
2686241 |
T |
|
| Q |
317 |
atgatgaattgagaagtactatgtttccattgtcaccgattttgaggtgactattggttgaattttgaagagggttgtctctg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2686242 |
atgatgaattgagaagtactatgtttccattgtcaccgattttgaggtgactattggttgaattttgaagagggttgtctctg |
2686324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 2669967 - 2669927
Alignment:
| Q |
147 |
tggtaacaaagtatctgttggataatcaaagctttgccata |
187 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
2669967 |
tggtaacaaagtatctgttggatgatcaaaactctgccata |
2669927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 36361060 - 36360942
Alignment:
| Q |
88 |
ttccatgatgttaagtgtttttctgtgtttttgtcgaagttccaaccgatattcatggatggtaacaaagtatctgttggataatcaaagctttgccata |
187 |
Q |
| |
|
|||||||| ||| |||| |||||||||| |||||||||||||||| | ||||| ||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
36361060 |
ttccatgaatttatgtgtgtttctgtgttcgtgtcgaagttccaaccaagtttcataccaggtaacaaagtatctgtagggtaatcaaaactttgccata |
36360961 |
T |
|
| Q |
188 |
gatattttgtcggatcatt |
206 |
Q |
| |
|
|| | ||||| |||||||| |
|
|
| T |
36360960 |
gaaaatttgttggatcatt |
36360942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University