View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_3 (Length: 693)
Name: NF18071_low_3
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_3 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 49825101 - 49825515
Alignment:
| Q |
3 |
agatggacatcatcatacacccgcttcacagcttagttacgccatccatgcttcaagttgccatcagttatctcaactttaaacaacannnnnnnngtct |
102 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
49825101 |
agatcgacatcatcagacacccgcttcacaacttagttacgccatccatgcttcaagttgccatcagttatctcgactttaaacaacattttttt-gtct |
49825199 |
T |
|
| Q |
103 |
atgaacaaatccagatcagcaggatattcgtcattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgaccgcatagttgcgccaat |
202 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49825200 |
atgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgacagcatagttgcgccaat |
49825299 |
T |
|
| Q |
203 |
tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaacaatatcaaattcatttggatactcgctcgcttgagggtttac |
302 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||||||||| |
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| T |
49825300 |
tatgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaaaaatatccaactcattgggata----ctcgcttgagggtttac |
49825395 |
T |
|
| Q |
303 |
cctgatcaaatgaaacgcactccaaattaccaacatgcataaaaatacgatcgtatcacaatatnnnnnnnngatataaccaaagtgatcataatttacc |
402 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||| |
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| T |
49825396 |
cctgatcaaataaaacgcactccaaattaataacatgcataaaaatacaatcatatcacaata----aaaaagctataaccaaagtgatcataatttacc |
49825491 |
T |
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| Q |
403 |
tgactgtttgcctcaatcaaatct |
426 |
Q |
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| T |
49825492 |
tgactgtttgcctcaatcaaatct |
49825515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 442 - 675
Target Start/End: Original strand, 49825560 - 49825797
Alignment:
| Q |
442 |
accagtgttgtccatcacttcaatgtgcaccttgtacctaaaccattcgagaaaccatttaaatctgaatctggaaattattttataccatttgagaaac |
541 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49825560 |
accagtgttgtccatcacttgaatgtgcaccttgtacctaaaccattcgagaaaccatttaaatctgaatctgtaaattattttataccatttgagaaac |
49825659 |
T |
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| Q |
542 |
cattttaca----cagtgcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaa |
637 |
Q |
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| T |
49825660 |
cattttacactgtcagtgcataaaaactcaattcacctgacgccaaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaa |
49825759 |
T |
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| Q |
638 |
ccagcaacagcacgataagtcttaaactatggaatata |
675 |
Q |
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| T |
49825760 |
ccagcaacaccacgataaatcttaaactacgaaatata |
49825797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 555 - 675
Target Start/End: Original strand, 49234908 - 49235028
Alignment:
| Q |
555 |
gcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcacgata |
654 |
Q |
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||||| |||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
49234908 |
gcatagaaactcaattcacctgacgccaaaagatgaggacgttagatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgata |
49235007 |
T |
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| Q |
655 |
agtcttaaactatggaatata |
675 |
Q |
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| T |
49235008 |
aatcttaaacgaaggaatata |
49235028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 642
Target Start/End: Original strand, 830287 - 830357
Alignment:
| Q |
572 |
acctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagc |
642 |
Q |
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| T |
830287 |
acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggtggaccataatcataaaaaccagc |
830357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 551 - 675
Target Start/End: Original strand, 941787 - 941911
Alignment:
| Q |
551 |
cagtgcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcac |
650 |
Q |
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||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
941787 |
cagtgcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccac |
941886 |
T |
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| Q |
651 |
gataagtcttaaactatggaatata |
675 |
Q |
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||||| |||||||| | |||||||| |
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| T |
941887 |
gataaatcttaaacgaaggaatata |
941911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 50861762 - 50861642
Alignment:
| Q |
555 |
gcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcacgata |
654 |
Q |
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||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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| T |
50861762 |
gcatagaaactcaattcacctgacgccaaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgata |
50861663 |
T |
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| Q |
655 |
agtcttaaactatggaatata |
675 |
Q |
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| T |
50861662 |
aatcttaaacgacggaatata |
50861642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 646
Target Start/End: Complemental strand, 47934481 - 47934426
Alignment:
| Q |
591 |
tgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaaca |
646 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47934481 |
tgacgttagatttaacaacacaaccaggaggaccataatcataaaaaccagcaaca |
47934426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 232658 - 232573
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
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||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
232658 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
232573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 14584717 - 14584802
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
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||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
14584717 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
14584802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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