View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_30 (Length: 407)
Name: NF18071_low_30
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 35482723 - 35482559
Alignment:
| Q |
16 |
aacacaaatactactccataaccaattcttcaatctacttcccaagatgctttcaccatgtatcagttctgtaaacactctaaatctaaaatttcttaat |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482723 |
aacacaaatactacaccataaccaattcttcaatctacttcccaagatgctttcaccatgtatcagttctgtaaacactctaaatctaaaatttcttaat |
35482624 |
T |
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| Q |
116 |
atcccaccctcttcctccaatctcaaccattctttttaccgctttaaatcaatctcagccgtcct |
180 |
Q |
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| T |
35482623 |
atcccaccctcttcctccaatctcaaccgttctttttaccgctttaaatcaatctcagccgtcct |
35482559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 35482449 - 35482353
Alignment:
| Q |
293 |
ccatcaaaatacgacaacctcgacatcccaggtcgcattgacatcctcgccaaccgtctcggtgcctggcacgaatacgctcctctcatcacttccc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482449 |
ccatcaaaatacgacaacctcgacatcccaggtcgcatcgacatcctcgccaaccgtctcggtgcctggcacgaatacgctcctctcatcacttccc |
35482353 |
T |
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