View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_32 (Length: 405)
Name: NF18071_low_32
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 278920 - 279300
Alignment:
| Q |
16 |
gaagattcaggattttcagttgcacgtttctttcaaaatggtggtgccctccaaaattactacatgtatcatggaggaacaaattttggacgaaccgcag |
115 |
Q |
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| T |
278920 |
gaagattcagcattttcagttgcacgtttctttcaaaatggtggtgccctccaaaattactacttgtatcatggaggaacaaattttggacgaaccgcgg |
279019 |
T |
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| Q |
116 |
gtggcccgtttatcattacagcatatgactatgatgcaccacttgatgaatatggtaacttaaatgaaccaaaatatggacatcttaaaagactccatgc |
215 |
Q |
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| T |
279020 |
gtggcccgtttatcattacaacatatgactatgatgcaccacttgatgaatatggtaacttaattgaaccaaaatatggacatcttaaaagactccatgc |
279119 |
T |
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| Q |
216 |
tgccataaagttaggagagaaggttcgtaccaatggcactgctacttgggagagtcatggagattatttatggatgactacttatacaaataaggacact |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
279120 |
tgccataaagttaggagagaaggttctcaccaatggcactgctacttgggagagtcatggagattctttatggatgactacttatacaaataagggcact |
279219 |
T |
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| Q |
316 |
ggacaaaaaatttgttttttgagtaattcacatacctctaaagatgctgaagttgatttacaacaagatggaaagtattat |
396 |
Q |
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| T |
279220 |
ggacaaaaattttgttttttgagtaattcacatacctctaaagatgctgaagttgatttacaacaagatggaaagtattat |
279300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 9643137 - 9643321
Alignment:
| Q |
16 |
gaagattcaggattttcagttgcacgtttctttcaaaatggtggtgccctccaaaattactacatgtatcatggaggaacaaattttggacgaaccgcag |
115 |
Q |
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| T |
9643137 |
gaagattcagctttctctgtggcacgttttttccaaaatggtggtgtattaaacaattactacatgtaccatggaggaacaaactttggtcgcaccgcag |
9643236 |
T |
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| Q |
116 |
gtggcccgtttatcattacagcatatgactatgatgcaccacttgatgaatatggtaacttaaatgaaccaaaatatggacatct |
200 |
Q |
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| T |
9643237 |
gtgggccgtatataacaacatcatatgactatgatgcaccaattgatgagtatgggaatttgaatcaacctaaatggggacatct |
9643321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 8140781 - 8140691
Alignment:
| Q |
81 |
gtatcatggaggaacaaattttggacgaaccgcaggtggcccgtttatcattac-agcatatgactatgatgcaccacttgatgaatatggt |
171 |
Q |
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| T |
8140781 |
gtatcatggaggaacaaattttggccgcacagctggaggtccttttatcactaccagc-tatgactatgatgctccactagatgaatatggt |
8140691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 10545101 - 10545222
Alignment:
| Q |
34 |
gttgcacgtttctttcaaaatggtggtgccctccaaaattactacatgtatcatggaggaacaaattttggacgaaccgcaggtggcccgtttatcatta |
133 |
Q |
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| T |
10545101 |
gttgcacgttttttccaaaatggtggtgtatttaacaattactacatgtaccatggaggaaccaattttggtcgcacatctggtggaccatatattataa |
10545200 |
T |
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| Q |
134 |
cagcatatgactatgatgcacc |
155 |
Q |
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|| | ||||||||||||||||| |
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| T |
10545201 |
catcttatgactatgatgcacc |
10545222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 42988786 - 42988694
Alignment:
| Q |
81 |
gtatcatggaggaacaaattttggacgaaccgcaggtggcccgtttatcattacagcatatgactatgatgcaccacttgatgaatatggtaa |
173 |
Q |
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| T |
42988786 |
gtatcatggaggaacaaattttggtagaacagctggtggtcctttcattgctacaagctatgactatgatgcacctcttgatgaatatggtaa |
42988694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 18585187 - 18585280
Alignment:
| Q |
81 |
gtatcatggaggaacaaattttggacgaaccgcaggtggcccgtttatcattacagcatatgactatgatgcaccacttgatgaatatggtaac |
174 |
Q |
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| T |
18585187 |
gtatcatggtggaactaattttggaagaacagctggtggtccatacattactacttcatatgattatgatgcacctcttgatgaatatggtaac |
18585280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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