View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_33 (Length: 402)
Name: NF18071_low_33
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 34428131 - 34428501
Alignment:
| Q |
17 |
acattcctgatggccgctcattccttggtgttccgcggtattataggcatagtattcttgtgctgcagagagcagtgaaagaatggaattctcatcagaa |
116 |
Q |
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| T |
34428131 |
acattcctgatggccgctcattccttggtgttccgcggtattataggcatagtattcttgtgctgcagagagcagtgaaagaatggaattctcatcagaa |
34428230 |
T |
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| Q |
117 |
gcataagtttgtgattaatttaggagatattgttgatgggttttgtcccaaagatcaatctattaatgctgtaaagaaagttgtggatgaatttgaaatg |
216 |
Q |
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| T |
34428231 |
gcataagtttgtgattaatttaggagatattgttgatgggttttgtcccaaagatcaatctattaatgctgtaaagaaagttgtggatgaatttgaaatg |
34428330 |
T |
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| Q |
217 |
tttaggggacctgtgtataatatgattggcaatcattgtctttacaatcttcctcgaagcacattacttccattattgaagatcccaacccttgatggtt |
316 |
Q |
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| T |
34428331 |
ttcaggggacctgtgtataatatgattggcaatcactgtctttacaatcttcctcgaagcacattacttccattattaaagatcccaacccttgatggtt |
34428430 |
T |
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| Q |
317 |
gtgcttactatgacttctcaccagtgccagaatatagatttgtagttctggatagctatgacatcagtgcc |
387 |
Q |
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| T |
34428431 |
gtgcttactatgacttctcaccagtgccagaatatagatttgtagttctggatagctatgacatcagtgcc |
34428501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 43377144 - 43377511
Alignment:
| Q |
19 |
attcctgatggccgctcattccttggtgttccgcggtattataggcatagtattcttgtgctgcagagagcagtgaaagaatggaattctcatcagaagc |
118 |
Q |
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||||||||||| || ||||||||||||||||| || || ||||||||||| ||| |||| | || |||||||| || | ||||| |||||| || | |
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| T |
43377144 |
attcctgatggacgttcattccttggtgttcctcgttactataggcatagcattgatgtgttacaaagagcagttcaaaattggaacaatcatcaaaaac |
43377243 |
T |
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| Q |
119 |
ataagtttgtgattaatttaggagatattgttgatgggttttgtcccaaagatcaatctattaatgctgtaaagaaagttgtggatgaatttgaaatgtt |
218 |
Q |
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| || |||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||| || |||| ||||||||||| | || |
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| T |
43377244 |
acaaatttgtgataaatttaggagatattgttgatgggttttgtccaaaagaccaatcttttaacactgtaaaaaagattgtcgatgaatttgacaaatt |
43377343 |
T |
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| Q |
219 |
taggggacctgtgtataatatgattggcaatcattgtctttacaatcttcctcgaagcacattacttccattattgaagatcccaacccttgatggttgt |
318 |
Q |
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|||| || ||| || | ||||| ||||| ||||| |||||||| ||||| | |||||||| || |||||||| | | |||||| |||| | |
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| T |
43377344 |
cgatggacaagtatatcatttaattggaaatcactgtctatacaatctacctcgcgaaaagttacttccgttgttgaagattcatagccttgaaggttat |
43377443 |
T |
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| Q |
319 |
gcttactatgacttctcaccagtgccagaatatagatttgtagttctggatagctatgacatcagtgc |
386 |
Q |
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|||||||| || || || || || || |||||||||||||||||||| ||| | ||||| || ||||| |
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| T |
43377444 |
gcttactacgaattttctcccgtcccggaatatagatttgtagttcttgatggatatgatataagtgc |
43377511 |
T |
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