View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_34 (Length: 402)
Name: NF18071_low_34
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 38850354 - 38850736
Alignment:
| Q |
19 |
cacgataccctataaccaagtgtcacatgctaatcactcaaaacagaaagattcgtttaaagggttgacatttcttaagagatactcttctatacaattc |
118 |
Q |
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| T |
38850354 |
cacgataccctataacaaagtgtcgcatgctaatcactcaaaacagaaagattcgtttaaagggttgacatttcttaagagatactcttctatataattc |
38850453 |
T |
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| Q |
119 |
aacctaaaatcaaagcataatcacatatttaatagaactcaattgattcccatggtgtcacaccatattaccaagtgattctgtgataggggacatacaa |
218 |
Q |
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| T |
38850454 |
aacctaaaatcaaagcataatcacatatttaatagaactcaattgattctcatggtgtcacaccatattaccaagtgattctgtgataggggacatacaa |
38850553 |
T |
|
| Q |
219 |
agtcaaacatagcaatacagagaagaaatgaaaattgttataattaatggtaagaaggaaaagtattcatacgttccaaccgttagtggttcaccaagta |
318 |
Q |
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| T |
38850554 |
agtcaaacatagcaatacagagaagaaatgaaaattgttataattaacggtaagaaggaaaagtattcatacgttccaaccgttagtggttcaccaagta |
38850653 |
T |
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| Q |
319 |
tcatagcttctgcaaaggcaacaaaaacaagtgcaagtggattgaacattgaagggtaagtaggtcccttgatagttattgcc |
401 |
Q |
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| T |
38850654 |
tcatagcttctgcaaaggcaacaaaaacaagtgcaagtggattgaacattgaagggtaagtaggtcccttgatagtcattgcc |
38850736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 388
Target Start/End: Original strand, 29222653 - 29222793
Alignment:
| Q |
244 |
aaatgaaaattgttataattaatggtaagaaggaaaagtattcatacgttccaaccgttagtggttcaccaagtatcatagcttctgcaaaggcaacaaa |
343 |
Q |
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| T |
29222653 |
aaatgaaaattgttataataag----aagagggaaaaatattcatacgttccaactttgagtggttcaccaagtatgatagtgtcagatatggcaacgaa |
29222748 |
T |
|
| Q |
344 |
aacaagtgcaagtggattgaacattgaagggtaagtaggtccctt |
388 |
Q |
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| T |
29222749 |
aacaagagccaatggattgaacattggagggaaagtaggtccctt |
29222793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 385
Target Start/End: Complemental strand, 29148188 - 29148084
Alignment:
| Q |
281 |
gtattcatacgttccaaccgttagtggttcaccaagtatcatagcttctgcaaaggcaacaaaaacaagtgcaagtggattgaacattgaagggtaagta |
380 |
Q |
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||||||||||||||||||| ||| ||||| |||||||| ||||| |||| | |||||| |||| ||| || | ||||| ||||| | |||||||||| |
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| T |
29148188 |
gtattcatacgttccaacccttaacggttcgccaagtatgatagcctctgatatggcaacgaaaataagagccaacggattaaacatcggagggtaagta |
29148089 |
T |
|
| Q |
381 |
ggtcc |
385 |
Q |
| |
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||||| |
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| T |
29148088 |
ggtcc |
29148084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 391
Target Start/End: Original strand, 5302697 - 5302816
Alignment:
| Q |
272 |
gaaggaaaagtattcatacgttccaaccgttagtggttcaccaagtatcatagcttctgcaaaggcaacaaaaacaagtgcaagtggattgaacattgaa |
371 |
Q |
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||||||||||||||| ||||||||||| | ||||||||||||||||| | |||||||| || |||||||||||| || ||||||||||||||||| | |
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| T |
5302697 |
gaaggaaaagtattcttacgttccaactttgagtggttcaccaagtatgaaagcttctgaaatggcaacaaaaactagacaaagtggattgaacattgga |
5302796 |
T |
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| Q |
372 |
gggtaagtaggtcccttgat |
391 |
Q |
| |
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|| ||| ||||||||||||| |
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| T |
5302797 |
ggataactaggtcccttgat |
5302816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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