View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_36 (Length: 394)
Name: NF18071_low_36
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 34836556 - 34836174
Alignment:
| Q |
1 |
ttttaagattcaattcatttcgttaaaatggtgtggtatttgtccctttaagtttaattaagtaggggttggagtttgaatgaacttcatattttttcca |
100 |
Q |
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| T |
34836556 |
ttttaagatcaaattcatttcgttaaaatggtgtggtatttatctctttgagcttaactcagtaggggttggagtttgaataaactttatattttttc-a |
34836458 |
T |
|
| Q |
101 |
tatttaaaatctgtgtgctctaattattagaatacttaacaaaaacc-----tttggtacacaaaacagtgcatatgcaaatccaactatgccaacgtta |
195 |
Q |
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||||||||||| || |||||||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34836457 |
catttaaaatctatgagctctaatcattagactacttaacaaaaacaattagtttggtacacaaaatagtgcatatgcaaatccaactatgccaacgtta |
34836358 |
T |
|
| Q |
196 |
gtttctgattatgtttatttaagggtttacttgatcaagcaaatgtataagctgatgctacaaattggccaaagccaaaatgttctttttaggtaatatg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34836357 |
gtttctgattatgtttatttaagggtttacttgatcaagcaaatgtataagctgatgctacaaattggccaaagccaaaatgttctttttaggtaatgtg |
34836258 |
T |
|
| Q |
296 |
ttcaatcatattgtaaatctttgtcgtcggtccaaaatgatgagtactactagatgcttaggtatatttgataataaaacgtga |
379 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34836257 |
ttcaatcatattgtaaatctttgtcgtcagtccaaaatgatgagtactactagatgcttaggtatatttgataataaaacgtga |
34836174 |
T |
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