View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_low_37 (Length: 389)
Name: NF18071_low_37
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 74 - 368
Target Start/End: Complemental strand, 39290414 - 39290120
Alignment:
| Q |
74 |
taagtttctactataggtaaacaaaagtaacttaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaattacttgccttaaaattttgt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39290414 |
taagtttctactataggtaaacaaaagtaactaaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaattacttgccttaaaattttgt |
39290315 |
T |
|
| Q |
174 |
gtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctctaacaacatctctactaccttcaggattactt |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39290314 |
gtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctctaacaacatctctactaccttcaggattactt |
39290215 |
T |
|
| Q |
274 |
gtaacaataacaacttcaacattccaattaatagcagcattcacactcatctcagccacattaggacgaccagaaacaacagtatcatgaacaat |
368 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39290214 |
gtgacaataacaacttcaacattccaattaatagcagcattcacactcatctcagccacattaggacgaccagaaacagcagtatcatgaacaat |
39290120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 144 - 372
Target Start/End: Complemental strand, 39297221 - 39296996
Alignment:
| Q |
144 |
agtaacaaattacttgccttaaaattttgtgtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctcta |
243 |
Q |
| |
|
||||||||||||||||||||| || ||| ||| || || || ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
39297221 |
agtaacaaattacttgccttacaagtttttgt---ttagaacctttcaagagtcccaaattggaccaaaagcaggaattttagccttgttacaagctcta |
39297125 |
T |
|
| Q |
244 |
acaacatctctactaccttcaggattacttgtaacaataacaacttcaacattccaattaatagcagcattcacactcatctcagccacattaggacgac |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39297124 |
acaacatctctactaccttcaggattacttgtaacaataacaacttcaacattccaattattagcagcattcacactcatctcagccacattaggacgac |
39297025 |
T |
|
| Q |
344 |
cagaaacaacagtatcatgaacaataatt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39297024 |
cagaaacaacagtatcatgaacaataatt |
39296996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University