View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_38 (Length: 381)
Name: NF18071_low_38
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 404788 - 404926
Alignment:
| Q |
232 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgag |
331 |
Q |
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| T |
404788 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgag |
404887 |
T |
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| Q |
332 |
catgttgtgctattgtcactgagctaacaattgcttcat |
370 |
Q |
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| T |
404888 |
catgttgtgctattgtcactgagctaacaattgcttcat |
404926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 404590 - 404702
Alignment:
| Q |
17 |
gaaagcactttcaaatgtggaggggatgcgcatacaactatggaaggttcgtgtttgattatgatgcatgcccatagaatggaatgaaaaagagcaatgt |
116 |
Q |
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| T |
404590 |
gaaagcactttcaaatgtggaggggatgcgcatacaactatggaaggttcgtgtttgattatgatgcatgcccatagaatggaatgaaaaagagcaatgt |
404689 |
T |
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| Q |
117 |
gattatcatttgt |
129 |
Q |
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| T |
404690 |
gattatcatttgt |
404702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 370
Target Start/End: Complemental strand, 973049 - 972907
Alignment:
| Q |
232 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaa----ttagcaccaata |
327 |
Q |
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| T |
973049 |
atcacaaacagaaagtttgtaatattagcacctatatgagttttgaaaacatgtcttatttgagaacttttcattatcttttaattagttaggaccaata |
972950 |
T |
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| Q |
328 |
tgagcatgttgtgctattgtcactgagctaacaattgcttcat |
370 |
Q |
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| T |
972949 |
cgagcatgttgtgttgttatcactgaggtaacaatttcttcat |
972907 |
T |
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