View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_39 (Length: 380)
Name: NF18071_low_39
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 45146686 - 45147026
Alignment:
| Q |
19 |
ccaacgaactcggacttcgacatccaagagctgccaaatactctgtctatgtgacagtctttcaatcgcttttcatgggaatattcttcatgggtgtaat |
118 |
Q |
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| T |
45146686 |
ccaacgaactcggacttcgacatccaagagctgccaaatactctgtctatgtgacagtctttcaatctcttttcatgggaatattcttcatgggtgtaat |
45146785 |
T |
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| Q |
119 |
tttggtaactaaagactattttgccattgtttttaccaatagtaagactttgcaagtggcggttgcagatctgggaaacctccttgccgtgacaatggtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146786 |
tttggtaactaaagactattttgccattgtttttaccaatagtaagactttgcaagtggcggttgcagatctgggaaacctccttgccgtgacaatggtt |
45146885 |
T |
|
| Q |
219 |
ctaaacagcgttcaaccagtgatttcgggtatgagtttgttagcattttccttgtctacttcatgaagggtaactaacagatcatcgccttagtttatct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146886 |
ctaaacagcgttcaaccagtgatttcgggtatgagtttgttagcattttccttgtctacttcatgaagggtaactaacagatcatcgccttagtttatct |
45146985 |
T |
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| Q |
319 |
tctattcacccacttgaaattattcttacaggtgttgctgt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146986 |
tctattcacccacttgaaattattcttacaggtgttgctgt |
45147026 |
T |
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