View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_4 (Length: 651)
Name: NF18071_low_4
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 49825101 - 49825515
Alignment:
| Q |
3 |
agatggacatcatcatacacccgcttcacagcttagttacgccatccatgcttcaagttgccatcagttatctcaactttaaacaacannnnnnnngtct |
102 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
49825101 |
agatcgacatcatcagacacccgcttcacaacttagttacgccatccatgcttcaagttgccatcagttatctcgactttaaacaacattttttt-gtct |
49825199 |
T |
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| Q |
103 |
atgaacaaatccagatcagcaggatattcgtcattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgaccgcatagttgcgccaat |
202 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49825200 |
atgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgacagcatagttgcgccaat |
49825299 |
T |
|
| Q |
203 |
tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaacaatatcaaattcatttggatactcgctcgcttgagggtttac |
302 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||||||||| |
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| T |
49825300 |
tatgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaaaaatatccaactcattgggata----ctcgcttgagggtttac |
49825395 |
T |
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| Q |
303 |
cctgatcaaatgaaacgcactccaaattaccaacatgcataaaaatacgatcgtatcacaatatnnnnnnnngatataaccaaagtgatcataatttacc |
402 |
Q |
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| T |
49825396 |
cctgatcaaataaaacgcactccaaattaataacatgcataaaaatacaatcatatcacaata----aaaaagctataaccaaagtgatcataatttacc |
49825491 |
T |
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| Q |
403 |
tgactgtttgcctcaatcaaatct |
426 |
Q |
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| T |
49825492 |
tgactgtttgcctcaatcaaatct |
49825515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 442 - 635
Target Start/End: Original strand, 49825560 - 49825757
Alignment:
| Q |
442 |
accagtgttgtccatcacttcaatgtgcaccttgtacctaaaccattcgagaaaccatttaaatctgaatctggaaattattttataccatttgagaaac |
541 |
Q |
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| T |
49825560 |
accagtgttgtccatcacttgaatgtgcaccttgtacctaaaccattcgagaaaccatttaaatctgaatctgtaaattattttataccatttgagaaac |
49825659 |
T |
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| Q |
542 |
cattttaca----cagtgcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaa |
635 |
Q |
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| T |
49825660 |
cattttacactgtcagtgcataaaaactcaattcacctgacgccaaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaa |
49825757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 635
Target Start/End: Original strand, 49234908 - 49234988
Alignment:
| Q |
555 |
gcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaa |
635 |
Q |
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| T |
49234908 |
gcatagaaactcaattcacctgacgccaaaagatgaggacgttagatttaacagcacaaccaggaggaccataatcataaa |
49234988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 635
Target Start/End: Original strand, 830287 - 830350
Alignment:
| Q |
572 |
acctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaa |
635 |
Q |
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| T |
830287 |
acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggtggaccataatcataaa |
830350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 555 - 632
Target Start/End: Complemental strand, 50861762 - 50861685
Alignment:
| Q |
555 |
gcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcat |
632 |
Q |
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| T |
50861762 |
gcatagaaactcaattcacctgacgccaaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcat |
50861685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 47934481 - 47934437
Alignment:
| Q |
591 |
tgacattagatttaacggcacaaccaggaggaccataatcataaa |
635 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
47934481 |
tgacgttagatttaacaacacaaccaggaggaccataatcataaa |
47934437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 551 - 635
Target Start/End: Original strand, 941787 - 941871
Alignment:
| Q |
551 |
cagtgcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaa |
635 |
Q |
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| T |
941787 |
cagtgcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaa |
941871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 232658 - 232573
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
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| T |
232658 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
232573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 14584717 - 14584802
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
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| T |
14584717 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
14584802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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