View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_40 (Length: 371)
Name: NF18071_low_40
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_40 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 32425982 - 32425622
Alignment:
| Q |
11 |
catcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcacaataaaatctcat |
110 |
Q |
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| T |
32425982 |
catcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaacgcaaattcattaggaagaagggaaactagacacaagatcacaataaaatctcat |
32425883 |
T |
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| Q |
111 |
tacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatcataatttcatgcag |
210 |
Q |
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| T |
32425882 |
tacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatcataatttcatgcag |
32425783 |
T |
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| Q |
211 |
catgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatt |
310 |
Q |
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| T |
32425782 |
catgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcgtatccgccttgatttgcagaggcgtgtccagcttgatt |
32425683 |
T |
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| Q |
311 |
tggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcct |
371 |
Q |
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| T |
32425682 |
tggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcct |
32425622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 32421859 - 32421822
Alignment:
| Q |
230 |
gagagtctactgattatttgcccatcctgcatttggag |
267 |
Q |
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| T |
32421859 |
gagagtctactgattatttgaccatccagcatttggag |
32421822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 32421658 - 32421602
Alignment:
| Q |
260 |
atttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggagg |
316 |
Q |
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| T |
32421658 |
atttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggagg |
32421602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 32421687 - 32421603
Alignment:
| Q |
255 |
cctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggaggaacgtatccgccttaatttggag |
339 |
Q |
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| T |
32421687 |
cctgcatttggaggagcatatccaccttgatttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggag |
32421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 1544180 - 1544078
Alignment:
| Q |
11 |
catcaaaacaatgaacttcacaaat-gtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcacaataaaatctca |
109 |
Q |
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| T |
1544180 |
catcaaaataatgaacttcaaaaattgtaaacttcaatacccgaaacacaaattcattatgaagaagggaaactagacctaagat--ctataaaatctca |
1544083 |
T |
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| Q |
110 |
ttact |
114 |
Q |
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||||| |
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| T |
1544082 |
ttact |
1544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 1544071 - 1544026
Alignment:
| Q |
223 |
tcaggacgagagtctactgattatttgcccatcctgcatttggaga |
268 |
Q |
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| T |
1544071 |
tcaggacgagagtctactgattatttgaccaaccagcatttggaga |
1544026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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