View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_low_41 (Length: 371)

Name: NF18071_low_41
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_low_41
NF18071_low_41
[»] chr7 (1 HSPs)
chr7 (13-371)||(28827844-28828202)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 28828202 - 28827844
Alignment:
Q  13 aatatgccaacaagatatgaatctacgactatttagactataattgattatgattaaacaatcaagattgtacaacaattttaacactattaaatgatgt 112  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28828202 aatatgtcaacgagatatgaatctacgactattgagactataattgattatgattaaacaatcaagattatacaacaattttaacactattaaatgatgt 28828103  T
Q  113 cggccattgattcaaatccgacggttgacataagtaacttcttatccaagtacaacaagctatttactttcatgacagtgacacatttattacaacaaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  28828102 cggccattgattcaaatccgacggttgacataagtaacttcttatccaagtccaacaagctatttactttcatgaccgtgacacatttattacaacaaat 28828003  T
Q  213 ttttcactttctcttccacaactcgtagtatttaaccaattttcaaatctcaatctccattacannnnnnncacatgatgctgaatccaacctatttcac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  28828002 ttttcactttctcttccacaactcgtagtatttaaccaattttcaaatctcaatctccattacatttttttcacatgatgctgaatccaacctatttcac 28827903  T
Q  313 caccattctcttcacctcgctccgcaattcatcctccaccaccacaaccttcctccttc 371  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28827902 caccattctcttcacctctctccgcaattcatcctccaccaccacaaccttcctccttc 28827844  T

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