View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_44 (Length: 361)
Name: NF18071_low_44
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 36595459 - 36595803
Alignment:
| Q |
1 |
gatatggttgtgtaatgtttcacacgaacttgttaggtccttgtgtgacaataatttattgggcaacagtagtagacataaatcacatcacctccatttc |
100 |
Q |
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| T |
36595459 |
gatatggttgtgtaatgtttcacacgaacttgttaggtccttgtgtgacaataatttattgggcaacagtagtagacataaatcacatcacctccatttc |
36595558 |
T |
|
| Q |
101 |
ggttgagaaaacattcattcaattcaatacaattatttaatggtttcatttgtttagaccataagctaaggatattgtcccttctttgggcggttgcaac |
200 |
Q |
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| T |
36595559 |
ggttgagaaaacattcattcaattcaatacaattatttaatggtttcattggtttagaccataagctaaggatattgtcccttctttgggcggttgcaac |
36595658 |
T |
|
| Q |
201 |
tgcatgactgcctaattaatatacatcgtgccacctctctttcacccagttcatcctatcctttctggtagttagttagttggtgtggaaaaatccactc |
300 |
Q |
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| T |
36595659 |
tgcatgactgcctaattaatatacatcgtgccacctctctttcacccagttcatcctatcctttctggtagttagttagttggtgtggaaaaatccactc |
36595758 |
T |
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| Q |
301 |
actctctcctgattaaatact-cccgatcttatttataagagaaa |
344 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
36595759 |
actctctcctgattaaatactccccggtcttatttataagagaaa |
36595803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 2931969 - 2931904
Alignment:
| Q |
122 |
attcaatacaattatttaatggtttcatttgtttagaccataagctaaggatattgtcccttcttt |
187 |
Q |
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||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||||||||| |
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| T |
2931969 |
attcaattcaattatttaatggttttgttgatttagaccatgatctaaggatattgtcccttcttt |
2931904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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