View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_45 (Length: 346)
Name: NF18071_low_45
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 175 - 330
Target Start/End: Complemental strand, 13397532 - 13397378
Alignment:
| Q |
175 |
caacatatgatgtctctaagagatacaaatcccgaatagtggtcaaggattctaacaaaacgaagaattttactatgaaatttttgctccaatagttaag |
274 |
Q |
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| T |
13397532 |
caacatatgatgtctctaagagatacaaatcccgaatggtggtcaaggattctagcaaaaggaagaattttactatgaaa-ttttgttccaatagttaag |
13397434 |
T |
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| Q |
275 |
ctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttga |
330 |
Q |
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| T |
13397433 |
ctcaatactatcatgtttctattaagtattgttgccattgaaaatctttatcttga |
13397378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 13397667 - 13397532
Alignment:
| Q |
11 |
acatcatcaaaactatttaattgaaccaaggagcaaactacatataacgaagcatatgaccacatgtgcaagtaagtggaagctttccatgaa--aaaat |
108 |
Q |
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| T |
13397667 |
acatcatcagaactatttaattgaaccaaggagcaaactacatataacgaaacatatgaccacatgtgcaagtaagtggaagctttccatgaaaaaaaat |
13397568 |
T |
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| Q |
109 |
aaagtctttgatctccgatcatacgtgggaacaagc |
144 |
Q |
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| T |
13397567 |
aaagtctttgatctctgatcatacgtgggaacaagc |
13397532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 19943884 - 19944037
Alignment:
| Q |
181 |
atgatgtctctaagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct |
276 |
Q |
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| T |
19943884 |
atgatggctcaaagagatacaaagcccgactagtggtcaaaggattccagcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagct |
19943983 |
T |
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| Q |
277 |
caatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttga |
330 |
Q |
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| T |
19943984 |
caatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttga |
19944037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 19943782 - 19943856
Alignment:
| Q |
105 |
aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca |
179 |
Q |
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| T |
19943782 |
aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca |
19943856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 8272951 - 8273093
Alignment:
| Q |
192 |
aagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagctcaatactatca |
287 |
Q |
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|||||||||||| ||||| |||||||||| |||||| | ||||| |||| | || |||| ||| |||||||||||| | || |||||||||||||||| |
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| T |
8272951 |
aagagatacaaagcccgactagtggtcaaaggattccagcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagctcaatactatca |
8273050 |
T |
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| Q |
288 |
tgtttctattaagtattgttgccagtgaaaatctttatcttga |
330 |
Q |
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|| | | |||||||||||||||||||||||||| |||||||| |
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| T |
8273051 |
ggtctgtcttaagtattgttgccagtgaaaatctctatcttga |
8273093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 796887 - 796734
Alignment:
| Q |
181 |
atgatgtctctaagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct |
276 |
Q |
| |
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|||||| ||| |||||||||||| ||||| |||||||||| |||||| ||||| |||| | || |||| ||| |||||||||||| | || ||||| |
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| T |
796887 |
atgatggctcaaagagatacaaagcccgactagtggtcaaaggattccggcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagct |
796788 |
T |
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| Q |
277 |
caatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttga |
330 |
Q |
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||||||||||| || | | |||||||||||||||||||||||||| |||||||| |
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| T |
796787 |
caatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttga |
796734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 796989 - 796915
Alignment:
| Q |
105 |
aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca |
179 |
Q |
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|||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| ||||||||||| |
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| T |
796989 |
aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca |
796915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 8272838 - 8272912
Alignment:
| Q |
105 |
aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca |
179 |
Q |
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|||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| ||||||||||| |
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| T |
8272838 |
aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca |
8272912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 6691934 - 6692087
Alignment:
| Q |
181 |
atgatgtctctaagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct |
276 |
Q |
| |
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|||||| ||| |||||||||||| ||||| |||||||||| || ||| | ||||| |||| | || ||| ||| |||||||||||| | || ||||| |
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| T |
6691934 |
atgatggctcaaagagatacaaagcccgactagtggtcaaagggttccagcaaaaggaaggaattgactgcactgagatttttgctccagtggtgaagct |
6692033 |
T |
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| Q |
277 |
caatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttga |
330 |
Q |
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||||||||||| || | | |||||||||||||||||||||||||| |||||||| |
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| T |
6692034 |
caatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttga |
6692087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 6691804 - 6691906
Alignment:
| Q |
81 |
agtaagtggaagctttccatgaaa----aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcaca |
176 |
Q |
| |
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||||||||| ||||| |||||||| |||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| |||||||| |
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| T |
6691804 |
agtaagtgggagcttgccatgaaagaggaaatgaagtctttgatctccaatcagacatgggagctagctaagttacccataggaaagaaggcacttcaca |
6691903 |
T |
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| Q |
177 |
aca |
179 |
Q |
| |
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||| |
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| T |
6691904 |
aca |
6691906 |
T |
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