View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_5 (Length: 647)
Name: NF18071_low_5
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Complemental strand, 607542 - 606921
Alignment:
| Q |
18 |
gttgtatctatgatttttgttatcatgtcatattttgtatgataaaatttccatatattcattcttatatccttaatgaaatctacatcctttttgttaa |
117 |
Q |
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| T |
607542 |
gttgtatctatgatttttgttatcatgtcatattttgtatgataaaatttccatctattcattcttatatccttaatgaaatctacatcctttttgttaa |
607443 |
T |
|
| Q |
118 |
tccttatcattcataaaggaaaagggatacgtgaccgaaagcaagtctcacaccaaacaagggaaaaaatgggtcactaatttcaaaactttggttcata |
217 |
Q |
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| T |
607442 |
cccttatcattcataaaggaaaagggatacgtgaccgaaagcaagtctcacaccaaacaagggaaaaaatgggtcactaatttcaaaactttggttcata |
607343 |
T |
|
| Q |
218 |
taatttcatttctacaatctgtacgagtactgcaatcgaatccgtttttcctcatctcaaaaagtgcattggcgtaacatgtatatatgtttgctctact |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
607342 |
taatttcaattctacaatctgtacgagtactgcaatcgaatccgtttttcctcatctcaaaaagtgcattggcgtaacatgtatatatgtttgctctact |
607243 |
T |
|
| Q |
318 |
acctagattttaacctttttgagataacctgaagcaacttagaactgtactaaattgagtatccacatatgtctgtcgtaccaatttgggggaccaacat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
607242 |
acctagattttaacctttttgagataacctgaagcaacttagaactgtactaaattgagtatccacttatgtctgtcgtaccaatttgggggaccaacat |
607143 |
T |
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| Q |
418 |
atccataactctgaaacaaaatcaaaaattgaatcgtcgtgtctttatt--gtgtatttgatccacttgtgactttgtgaggatatatatgatttgcgaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
607142 |
atccataactctgaaacaaaatcaaaaattgaatcgtcgtgtctttattgtgtgtatttgatccacttgtgactttgtgaggatatatatgatttgcgaa |
607043 |
T |
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| Q |
516 |
agagatatgtgatgtgagtagtgctcatcttgttaaagtgggtagaaatagcatacttccatcataattccgttgacaactcatccatcctacctcatat |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
607042 |
agagatatgtgatgtgagtagtgctcatcttgttaaagtgggtagaaatagcatacttccatcataattccgttgacaactcatccatcctacctcatat |
606943 |
T |
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| Q |
616 |
gtacctgtaacctattcctttg |
637 |
Q |
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|||||||||| ||||||||||| |
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| T |
606942 |
gtacctgtaatctattcctttg |
606921 |
T |
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