View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_50 (Length: 343)
Name: NF18071_low_50
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_50 |
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| [»] scaffold0045 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 5336133 - 5335822
Alignment:
| Q |
19 |
atctgggggattctgctttgtcacctggtaagaaagagagaggactgaattgtcttgagaatggagctctcctaggataggaatttgagttgaagatggg |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5336133 |
atctgggggattctgctttgtcgcctggtaagaaagagagaggactgaattgtcttgagaatggagctctcctaggacaggaatttgagttgaagatggg |
5336034 |
T |
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| Q |
119 |
gtagagttttcccaatctgtatttgtaaatctgttctcgaaggagatatcctaaaaacccttcattctcttgagttagaaattcacttttttaaggtgaa |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5336033 |
gtagagttttcccaatctgtatttgtaaatccgttctcgaaagagatatcctaaacacccttcattctcttgagttagaaattcacttttttaaggtgaa |
5335934 |
T |
|
| Q |
219 |
ttaatgggatgttcgagtttcaatctccgcccctgcctatattctacaatgtccctactaactgagctaaactcacaaggacattttcatacacgttttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5335933 |
ttaatgggatgttcgagtttcaatctccgcccctgcatatattctacaatgtccctactaactgagctaagctcacaaggacattttcatacacgttttt |
5335834 |
T |
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| Q |
319 |
atttatttttat |
330 |
Q |
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|||||||||||| |
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| T |
5335833 |
atttatttttat |
5335822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 20568251 - 20568352
Alignment:
| Q |
194 |
tagaaattcacttttttaaggtgaattaatgggatgttcgagtttcaatctccg-cccctgcctatattctacaatgtccctactaactgagctaaactc |
292 |
Q |
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||||||||||| ||| |||||||||| | |||| |||||| | ||| | | ||| ||||||| |||||| | |||||||| ||| ||||||||||| ||| |
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| T |
20568251 |
tagaaattcacctttataaggtgaataagtggggtgttcggggttcgaaccccgacccctgcatatattatgcaatgtccttaccaactgagctaagctc |
20568350 |
T |
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| Q |
293 |
ac |
294 |
Q |
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|| |
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| T |
20568351 |
ac |
20568352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 4600297 - 4600346
Alignment:
| Q |
252 |
tgcctatattctacaatgtccctactaactgagctaaactcacaaggaca |
301 |
Q |
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| T |
4600297 |
tgcctatattatacattgtccctaccaactgagctaaactcacatggaca |
4600346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 436597 - 436635
Alignment:
| Q |
263 |
tacaatgtccctactaactgagctaaactcacaaggaca |
301 |
Q |
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| T |
436597 |
tacaatgtccctaccaactgagctaaactcacgaggaca |
436635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 63900 - 63856
Alignment:
| Q |
256 |
tatattctacaatgtccctactaactgagctaaactcacaaggac |
300 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| |
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| T |
63900 |
tatattatacattgtccctaccaactgagctaaactcacgaggac |
63856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 71232 - 71188
Alignment:
| Q |
256 |
tatattctacaatgtccctactaactgagctaaactcacaaggac |
300 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| |
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| T |
71232 |
tatattatacattgtccctaccaactgagctaaactcacgaggac |
71188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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