View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_51 (Length: 334)
Name: NF18071_low_51
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23985785 - 23986101
Alignment:
| Q |
1 |
aaagaattcatataaaatcttagctatatatagtttcactagaattttgctatttcttaagaaactaatgtctaattgtttataaatttttcaactatgt |
100 |
Q |
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| T |
23985785 |
aaagaattcatataaaatcttagctatatatagttttactagagttttgctatttcttaagaaactaatgtctaattgtttatgaatttttcaactatgt |
23985884 |
T |
|
| Q |
101 |
ataggcatggagtgttccagctatatagtgcatggtcagatggacctgaatatataacacaatgttcaattcgtcctgaaaataaatttacatacaaatt |
200 |
Q |
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| T |
23985885 |
ataggcatggagtgttccagctatatagtgcatggtcagatggacctgaatatataacacaatgttcaattcgtcctgaaaataaatttacatacaaatt |
23985984 |
T |
|
| Q |
201 |
taatgtgacaaaacaagaaggaacattatggtggcatgctcatgcatcagttgtacgtgcaacagttcacggcgccattatcattcaacctcgttctggt |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23985985 |
taatgtgacacaacaagaaggaacattatggtggcatgctcatgcatcagttgtacgtgcaacagttcacggtgccattatcattcaacctcgttctggt |
23986084 |
T |
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| Q |
301 |
cgatttccatttcctaa |
317 |
Q |
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| T |
23986085 |
cgatttccatttcctaa |
23986101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 132 - 312
Target Start/End: Original strand, 43724961 - 43725141
Alignment:
| Q |
132 |
atggtcagatggacctgaatatataacacaatgttcaattcgtcctgaaaataaatttacatacaaatttaatgtgacaaaacaagaaggaacattatgg |
231 |
Q |
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| T |
43724961 |
atgggcagatgttcctcaatatataacccaatgttcaattcatcctgaaaataaatttacatacaaatttaatatgacacaacaaggagtaacattatgg |
43725060 |
T |
|
| Q |
232 |
tggcatgctcatgcatcagttgtacgtgcaacagttcacggcgccattatcattcaacctcgttctggtcgatttccattt |
312 |
Q |
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| T |
43725061 |
tggcatgctcacacatcagttgtatgtgcaacagttcatagtgcttttatcattcaacctcgttcgggtcgattttcattt |
43725141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 43726893 - 43727077
Alignment:
| Q |
110 |
gagtgttccagctatatagtgcatggtcagatggacctgaatatataacacaatgttcaattcgtcctgaaaataaatttacatacaaatttaatgtgac |
209 |
Q |
| |
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|||| |||||||||| |||||||||| |||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
43726893 |
gagtattccagctatttagtgcatgggcagatgttcctgaatatataacctaatgttcaattcttcctaaaaataaatttacatacaaatttaatatgac |
43726992 |
T |
|
| Q |
210 |
aaaacaagaaggaacattatggtggcatgctcatgcatcagttgtacgtgcaacagttcacggcgccattatcattcaacctcgt |
294 |
Q |
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| T |
43726993 |
acaataaggagtaacattatggtggcatgctcacacatctgtagtacgtgcaacagttcatggtgcttatatcattcaacctcgt |
43727077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 23974699 - 23974811
Alignment:
| Q |
205 |
gtgacaaaacaagaaggaacattatggtggcatgctcatgcatcagttgtacgtgcaacagttcacggcgccattatcattcaacctcgttctggtcgat |
304 |
Q |
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|||||| ||||||||||||| |||| |||||||||||| |||||||| ||||| | |||||| | || || | ||||||||||||| ||| ||||| |
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| T |
23974699 |
gtgacacaacaagaaggaactttattttggcatgctcatacatcagttctacgttccacagtttatggtgctttcatcattcaacctcattcaaatcgat |
23974798 |
T |
|
| Q |
305 |
ttccatttcctaa |
317 |
Q |
| |
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||||||||||||| |
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| T |
23974799 |
ttccatttcctaa |
23974811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 1414025 - 1413992
Alignment:
| Q |
131 |
catggtcagatggacctgaatatataacacaatg |
164 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
1414025 |
catggtcagatggacctgaatacataacacaatg |
1413992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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