View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_52 (Length: 332)
Name: NF18071_low_52
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 31114473 - 31114151
Alignment:
| Q |
1 |
tgcatgcttttttgtactcataatataactcttacttgcaaaacaagtcgccaattttttaacgaaccattggttcctgtttgtttgaagctttgggtgg |
100 |
Q |
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| T |
31114473 |
tgcatgcttttatgtactcataatataactcttacttgcaaaacaagtcaccaattttttaacgaaccatttgttcctgtttgtttgaagctttgggtgg |
31114374 |
T |
|
| Q |
101 |
gagaagttgttgagagtatctactgtcagcggccaccgtgtcagtggtgtttgtttgaacttgaggaagtggaagaagaatgatagagctttgcgaagtt |
200 |
Q |
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| T |
31114373 |
gagaagttgttgagagtatctactgtcagcggccactgtgtcagtggcgtttgtttgaacttgaggaagtggaagaagaatgatagagctttgcgaagtt |
31114274 |
T |
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| Q |
201 |
cctcctacacgatatattttctctcaatttttgttgttttctatcagcgtcgtatgtattcaataatgcatgaaatttgtttaatgtaacacaagcttac |
300 |
Q |
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| T |
31114273 |
cctcctacacgatatattttctcccaatttttgttgttttctatcagcgtcgtatgtattcaataatgcatgaaatttgtttaatgtaacacaagcttac |
31114174 |
T |
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| Q |
301 |
ataaatcaaaatttggatgatgt |
323 |
Q |
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| T |
31114173 |
attaatcaaaatttggatgatgt |
31114151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 31088340 - 31088287
Alignment:
| Q |
74 |
ttcctgtttgtttgaagctttgggtgggagaagttgttgagagtatctactgtc |
127 |
Q |
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| T |
31088340 |
ttcccgtttgtttgaagcttgcggtgggagaagttgtcgagagtttctactgtc |
31088287 |
T |
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