View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_56 (Length: 316)
Name: NF18071_low_56
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 29204130 - 29204430
Alignment:
| Q |
1 |
acaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204130 |
acaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgt |
29204229 |
T |
|
| Q |
101 |
ttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204230 |
ttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcag |
29204329 |
T |
|
| Q |
201 |
aaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctgaagttgtaaaataaaactagtatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204330 |
aaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctgaagttgtaaaataaaactagtatta |
29204429 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
29204430 |
t |
29204430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 12647746 - 12647446
Alignment:
| Q |
1 |
acaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647746 |
acaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgt |
12647647 |
T |
|
| Q |
101 |
ttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647646 |
ttggacgagtttttcttgcccagaaaagatcgactggtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcag |
12647547 |
T |
|
| Q |
201 |
aaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctgaagttgtaaaataaaactagtatta |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12647546 |
aaacaaagctagagagattgatttagcaaactatgttattaaacagtgcatacaaaaagcatgtatccattcctgaagttgtaaaataaaactagtatta |
12647447 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
12647446 |
t |
12647446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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