View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_62 (Length: 292)
Name: NF18071_low_62
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_62 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 4142510 - 4142228
Alignment:
| Q |
10 |
aagaatatggcattgaaagaggatgggctggtctacaggtatcctattctagcttcgttatgcgttatacttatacaactatattataacatgatctaga |
109 |
Q |
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| T |
4142510 |
aagaagatggcattgaaagaggatgggctggtctacaggtatcctattctagcttcgttatgcgttatacttatacaactatattataacatgatctaga |
4142411 |
T |
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| Q |
110 |
taatagttacaagatttgatgaatgattagagtttctctacaatgtagacaattccaaggaagttttggcttgatgaaagtgggaagcgattactgcagt |
209 |
Q |
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| T |
4142410 |
taatagttacaagatttgatgaatgattagagtttctctacaatgtagacaattccaaggaagttttggcttgatgaaagtgggaagcgattactgcagt |
4142311 |
T |
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| Q |
210 |
ggccaatcgaagagttagaacaactacgttacaatcaaatcaatatcactagagagacactcctaagtggatcaactcttgaa |
292 |
Q |
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| T |
4142310 |
ggccaatcgaagagttagaacaactacgttacaatcaaatcaatatcactagagagacactcctaagtggatcaactcttgaa |
4142228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 82 - 292
Target Start/End: Complemental strand, 4128753 - 4128543
Alignment:
| Q |
82 |
atacaactatattataacatgatctagataatagttacaagatttgatgaatgattagagtttctctacaatgtagacaattccaaggaagttttggctt |
181 |
Q |
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| T |
4128753 |
atacaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatgtagactattccaaggaagttttggctt |
4128654 |
T |
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| Q |
182 |
gatgaaagtgggaagcgattactgcagtggccaatcgaagagttagaacaactacgttacaatcaaatcaatatcactagagagacactcctaagtggat |
281 |
Q |
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| T |
4128653 |
gatgaaagtggggagagattaatgcagtggccaattgaagagttagaaaaacttggtggcaatcaaatcaatatcactggagaaacactccaaagtggat |
4128554 |
T |
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| Q |
282 |
caactcttgaa |
292 |
Q |
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| T |
4128553 |
caactcttgaa |
4128543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 89 - 292
Target Start/End: Complemental strand, 4137359 - 4137156
Alignment:
| Q |
89 |
tatattataacatgatctagataatagttacaagatttgatgaatgattagagtttctctacaatgtagacaattccaaggaagttttggcttgatgaaa |
188 |
Q |
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| T |
4137359 |
tatattataacctgatctagataatagttataagatttgatgaatgattagtgtttatttacaatgtagacaattccaaggaagttctggcttgataaga |
4137260 |
T |
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| Q |
189 |
gtgggaagcgattactgcagtggccaatcgaagagttagaacaactacgttacaatcaaatcaatatcactagagagacactcctaagtggatcaactct |
288 |
Q |
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| T |
4137259 |
atgggaagcaattaatgcaatggccaattgaagagttagaaaaacttcgtggcaaacaaatcaatatcaccggagaaacactccaaagtggatcaactct |
4137160 |
T |
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| Q |
289 |
tgaa |
292 |
Q |
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|||| |
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| T |
4137159 |
tgaa |
4137156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 4117450 - 4117379
Alignment:
| Q |
151 |
aatgtagacaattccaaggaagttttggcttgatgaaagtgggaagcgattactgcagtggccaatcgaaga |
222 |
Q |
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| T |
4117450 |
aatgtagacaattccaaggaaagtttggctagataaaagtgggaagagattgatgcaatggccaattgaaga |
4117379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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