View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_63 (Length: 291)
Name: NF18071_low_63
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 4302337 - 4302598
Alignment:
| Q |
14 |
agaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgag |
113 |
Q |
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| T |
4302337 |
agaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgag |
4302436 |
T |
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| Q |
114 |
ttctaattgaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacatttaatttcctt |
213 |
Q |
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| T |
4302437 |
ttctaattgaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacatttaatttcctt |
4302536 |
T |
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| Q |
214 |
gatgggccattgacttttagactctttaatttggcaaccaattgccacttgctataaatttt |
275 |
Q |
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| T |
4302537 |
gatgggccattgacttttagactctttaatttggcaaccaattgccacttgctataaatttt |
4302598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 55810715 - 55810568
Alignment:
| Q |
14 |
agaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgag |
113 |
Q |
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||||||||||||||||||||| ||||| || || |||| |||| |||||||||| |||||| |||||||||||||||||| ||||||| |||| ||| |
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| T |
55810715 |
agaggtgataagcaaacatgactagcaactcacaaaggaccaaaatcaaatccagacactccttgtggaacttcattttcagtttcttccttccta-gag |
55810617 |
T |
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| Q |
114 |
ttctaattgaagagtaggattaatttatcaaagtttcagttataaacaa |
162 |
Q |
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| |||||||| ||||| ||||||||| ||| ||||||||||||||||| |
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| T |
55810616 |
tgctaattgaggagtatgattaatttcacaaggtttcagttataaacaa |
55810568 |
T |
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