View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_65 (Length: 286)
Name: NF18071_low_65
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_65 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 31432665 - 31432394
Alignment:
| Q |
15 |
attctaatgatacctccaatgaaatacgtactcccactggataatttgcttatcaaaataactatctcggtcatctttttcaacacaaaagagcacaagt |
114 |
Q |
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| T |
31432665 |
attctaatgatacctccaatgaaatacgtactcccactggataatttgcttatcaaattaactatctcggtcatctttttcaacacaaaagagcacaagt |
31432566 |
T |
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| Q |
115 |
tcaattatgtttacctatagatattggttaggacatgtggattaaaagtgactatgacattgcttactatatgaagagagaacagggtggtgaaaaactc |
214 |
Q |
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| T |
31432565 |
tcaattatgtttacctatagagtttggttaggacatgtggattaaaagtgacaatgccattgcttactatatgaagagagaacagggtggtgaaaaactc |
31432466 |
T |
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| Q |
215 |
tggagtgaacaatcgccaaaagtggtaatgtacgtctagcaacaacaaagatacacatgctttttaacataa |
286 |
Q |
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| T |
31432465 |
tggagtgaacaatcgccaaaagtggtaatgtacgtctagcaacaacaaagatacacatgctttttaacataa |
31432394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 31431419 - 31431287
Alignment:
| Q |
103 |
aagagcacaagttcaattatgtttaccta-tagatattggttaggacatgtggattaaaagtgactatgacattgcttactatatgaagagagaacaggg |
201 |
Q |
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| T |
31431419 |
aagagctcaagttcaattatgtttcagtagttgacattggtctggatatgtggattaaaagtgacattgtcattatttactatatgaagaga--accagg |
31431322 |
T |
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| Q |
202 |
tggtgaaaaactctggagtgaacaatcgccaaaagt |
237 |
Q |
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| T |
31431321 |
tgat-aaaaactctggagtgaacaaacgtcaaaagt |
31431287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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