View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_low_78 (Length: 248)

Name: NF18071_low_78
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_low_78
NF18071_low_78
[»] chr7 (3 HSPs)
chr7 (15-248)||(34645234-34645467)
chr7 (19-245)||(34664938-34665164)
chr7 (15-244)||(34658261-34658490)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 34645234 - 34645467
Alignment:
Q  15 aaatacactaatagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttcatttccactagtgctgaaactatagta 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34645234 aaatacactaaaagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttcgtttccactagtgctgaaactatagta 34645333  T
Q  115 gctataatgttaaccacaaaccctactcccattctttgtaaacatgtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34645334 gctataatgttaaccacaaaccctactcccattctttgtaaacatgtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgtt 34645433  T
Q  215 catatagcataactcctatcatcatggttaggac 248  Q
    ||||||||||||||||||||||||||||||||||    
T  34645434 catatagcataactcctatcatcatggttaggac 34645467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 34664938 - 34665164
Alignment:
Q  19 acactaatagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttcatttccactagtgctgaaactatagtagcta 118  Q
    ||||| |||||||| ||||||||||||  ||| |||||||   | || | ||||||| |||||||||| |||||||| | ||||||||||||||| ||||    
T  34664938 acacttatagggataattgcttttggactatctaataagtggtatttggaagcaactttttttcttttgatttccaccaatgctgaaactatagtggcta 34665037  T
Q  119 taatgttaaccacaaaccctactcccattctttgtaaacatgtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgttcata 218  Q
    ||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||| ||    
T  34665038 taatgttaatcacaaagcctattcccattctttgcaaacatgtgattccagcaggattctttgtgaatctacggatgaatggaacgaataagcgttcgta 34665137  T
Q  219 tagcataactcctatcatcatggttag 245  Q
    ||| ||||| ||| |||||||||||||    
T  34665138 tagaataacacctgtcatcatggttag 34665164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 34658261 - 34658490
Alignment:
Q  15 aaatacactaatagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttcatttccactagtgctgaaactatagta 114  Q
    ||||||||| || || || ||||||||||||||||||||||||||| |||| |||||||||  ||||||||| ||||| ||| ||||||| | ||  ||     
T  34658261 aaatacacttattggaataattgcttttggatcatccaataagttatacttagcagcaacttcttttcttttgatttcaactggtgctgagattaatgtg 34658360  T
Q  115 gctataatgttaaccacaaaccctactcccattctttgtaaacatgtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgtt 214  Q
    ||||||||||| |  | ||| || | ||||||||||||||  || ||||||||| | ||||| ||||||||| ||||| ||| ||| | ||| | |||||    
T  34658361 gctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggatgaatacgcgtt 34658460  T
Q  215 catatagcataactcctatcatcatggtta 244  Q
    |||| || || ||||||  |||||||||||    
T  34658461 cataaagaattactcctgccatcatggtta 34658490  T

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