View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_79 (Length: 245)
Name: NF18071_low_79
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 26436835 - 26436907
Alignment:
| Q |
157 |
ttattatttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatctgaact |
229 |
Q |
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| T |
26436835 |
ttattatttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatttgaact |
26436907 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 26450203 - 26450268
Alignment:
| Q |
162 |
atttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatctgaa |
227 |
Q |
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| T |
26450203 |
atttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatctgaa |
26450268 |
T |
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 71228 - 71172
Alignment:
| Q |
1 |
ttcatgtttcatttgctgcactgttttgaaagaagcatgataggcatttcatcttgt |
57 |
Q |
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| T |
71228 |
ttcatgtttcatttgctgcactgttttggaagaagcatgatagacatttcatcttgt |
71172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 21896092 - 21896141
Alignment:
| Q |
90 |
tcatgatctttattgcttagtattttatccaaactcttgagcattgtgaa |
139 |
Q |
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| T |
21896092 |
tcatgatcttcagtgcttcatatttaatccaaactcttgagcattgtgaa |
21896141 |
T |
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