View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_low_8 (Length: 572)

Name: NF18071_low_8
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_low_8
NF18071_low_8
[»] chr4 (6 HSPs)
chr4 (29-224)||(35105107-35105302)
chr4 (422-555)||(35106484-35106617)
chr4 (308-412)||(35106310-35106415)
chr4 (125-180)||(49225440-49225495)
chr4 (117-167)||(22429609-22429659)
chr4 (135-171)||(46545732-46545768)
[»] chr8 (1 HSPs)
chr8 (29-224)||(6164796-6164993)
[»] chr1 (1 HSPs)
chr1 (57-100)||(29115058-29115101)
[»] chr2 (3 HSPs)
chr2 (121-179)||(24191845-24191903)
chr2 (132-173)||(18372280-18372321)
chr2 (125-173)||(19016042-19016090)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 35105107 - 35105302
Alignment:
Q  29 tcaagatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaattcatttgagttg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35105107 tcaagatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaactcatttgagttg 35105206  T
Q  129 atctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctcgaaattcgttcttccggtgccaatttaagttggctaacttaactt 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35105207 atctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctcggaattcgttcttccggtgccaatttaagttggctaacttaactt 35105302  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 422 - 555
Target Start/End: Original strand, 35106484 - 35106617
Alignment:
Q  422 ctctcatctcaagaactctagaatgtttcagaattttcaagaacagtagggatagaacgaatcaataaacagcattttctggaagttacatgatgaattc 521  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35106484 ctctcatctcaagaactctagaatgtttcagaattttgaagaacagtagggatagaacgaatcaataaacagcattttctggaagttacatgatgaatac 35106583  T
Q  522 ctccatctcttttataaaccgtgcctgcaaagca 555  Q
    ||||||||||||||||||||||||||||||||||    
T  35106584 ctccatctcttttataaaccgtgcctgcaaagca 35106617  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 35106310 - 35106415
Alignment:
Q  308 taaatatattttggagggcgcgcggaaatggttggaggtgagaaaagaaaaactaaca-nnnnnnnngtaatcaaatccaataactcaatgatgcaattc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||||||    
T  35106310 taaatatattttggagggcgcgcggaaatggttggaggtgagaaaagaaaaaccaacatttttttttgtaatcaaatccaataactcaatgatgcaattc 35106409  T
Q  407 ccttta 412  Q
    ||||||    
T  35106410 ccttta 35106415  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 49225495 - 49225440
Alignment:
Q  125 gttgatctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctcg 180  Q
    |||| |||| |||| |||||||||| ||||||||||||||| |||||||| |||||    
T  49225495 gttggtctggtggtgttggcttaaggcctgagagtgtgctcttcctcgatgtctcg 49225440  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 22429609 - 22429659
Alignment:
Q  117 tcatttgagttgatctgatggtattggcttaagacctgagagtgtgctcat 167  Q
    |||||| |||||||||| |||||||| ||| |||||| |||||||||||||    
T  22429609 tcatttaagttgatctggtggtattgacttgagacctaagagtgtgctcat 22429659  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 46545732 - 46545768
Alignment:
Q  135 tggtattggcttaagacctgagagtgtgctcatcctc 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  46545732 tggtattggcttgagacctgagagtgtgctcctcctc 46545768  T

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Target: chr8 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 6164993 - 6164796
Alignment:
Q  29 tcaagatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaattcatttgagttg 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6164993 tcaaaatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaactcatttgagttg 6164894  T
Q  129 atctgatggtattggcttaagacctgagagtgtgctcatcctcg--atatctcgaaattcgttcttccggtgccaatttaagttggctaacttaactt 224  Q
    |||||||||||||| | | |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6164893 atctgatggtattgacctgagacctgagagtgtgctcatcctcgatatatctcgaaattcgttcttccggtgccaatttaagctggctaacttaactt 6164796  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 29115101 - 29115058
Alignment:
Q  57 aaaattagtttgactcatccatgatattgctcgtgtttaattat 100  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||    
T  29115101 aaaattagtttgactcatccatgattttgtttgtgtttaattat 29115058  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 24191845 - 24191903
Alignment:
Q  121 ttgagttgatctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctc 179  Q
    ||||||||  ||||||||||||||||  ||||||||||||||||| |||| || |||||    
T  24191845 ttgagttggcctgatggtattggcttgggacctgagagtgtgctcctccttgagatctc 24191903  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 18372280 - 18372321
Alignment:
Q  132 tgatggtattggcttaagacctgagagtgtgctcatcctcga 173  Q
    ||||||||||| ||| |||||||||||| |||||||||||||    
T  18372280 tgatggtattgacttgagacctgagagtatgctcatcctcga 18372321  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 19016042 - 19016090
Alignment:
Q  125 gttgatctgatggtattggcttaagacctgagagtgtgctcatcctcga 173  Q
    |||| ||||||||||||||||| |||| || |||||||||| |||||||    
T  19016042 gttggtctgatggtattggcttgagacttgggagtgtgctcctcctcga 19016090  T

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