View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_86 (Length: 239)
Name: NF18071_low_86
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 47543847 - 47544052
Alignment:
| Q |
15 |
cacagacatctgatccttatgaacttggacttcagcctactgtaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaa |
114 |
Q |
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| T |
47543847 |
cacagacatctgatccttatgaacttggacttcatcctactgcaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaa |
47543946 |
T |
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| Q |
115 |
catttgcatgggaaatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47543947 |
catttgcatgggaaatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgt |
47544046 |
T |
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| Q |
215 |
tgttac |
220 |
Q |
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|||||| |
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| T |
47544047 |
tgttac |
47544052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 10266952 - 10266914
Alignment:
| Q |
114 |
acatttgcatgggaaatttataaaagttatccgtctttt |
152 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
10266952 |
acatttgcatgggaaatttataaaagttatccgtatttt |
10266914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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