View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_low_88 (Length: 237)

Name: NF18071_low_88
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_low_88
NF18071_low_88
[»] chr4 (8 HSPs)
chr4 (10-223)||(40459499-40459712)
chr4 (10-219)||(49499602-49499813)
chr4 (10-216)||(2761543-2761767)
chr4 (150-219)||(55162879-55162948)
chr4 (166-216)||(41869372-41869422)
chr4 (150-208)||(28968699-28968757)
chr4 (176-208)||(70014-70046)
chr4 (168-208)||(10276754-10276794)
[»] chr7 (17 HSPs)
chr7 (11-223)||(10288236-10288448)
chr7 (11-223)||(15873421-15873632)
chr7 (24-223)||(11035828-11036027)
chr7 (11-223)||(22078176-22078388)
chr7 (13-223)||(9993873-9994083)
chr7 (10-219)||(18366776-18366988)
chr7 (10-219)||(21490938-21491154)
chr7 (10-206)||(48653285-48653504)
chr7 (150-219)||(40106499-40106568)
chr7 (61-208)||(3691932-3692083)
chr7 (156-219)||(24056707-24056770)
chr7 (150-219)||(49169789-49169858)
chr7 (150-207)||(12196216-12196273)
chr7 (174-219)||(12911181-12911226)
chr7 (168-204)||(9554608-9554644)
chr7 (150-219)||(13163723-13163792)
chr7 (1-65)||(40106351-40106414)
[»] chr1 (14 HSPs)
chr1 (11-223)||(43406812-43407024)
chr1 (10-223)||(338656-338869)
chr1 (11-223)||(37666624-37666835)
chr1 (10-223)||(6836446-6836656)
chr1 (10-219)||(18472391-18472595)
chr1 (1-219)||(33007101-33007316)
chr1 (11-215)||(35761484-35761710)
chr1 (150-219)||(19198252-19198321)
chr1 (150-219)||(9536795-9536864)
chr1 (164-223)||(24276088-24276147)
chr1 (158-219)||(8422252-8422313)
chr1 (168-223)||(24055712-24055767)
chr1 (12-57)||(36386378-36386423)
chr1 (158-208)||(16075398-16075448)
[»] chr2 (14 HSPs)
chr2 (10-223)||(40448029-40448242)
chr2 (1-204)||(41339720-41339918)
chr2 (10-219)||(12773883-12774097)
chr2 (18-219)||(35670217-35670440)
chr2 (10-64)||(36731835-36731889)
chr2 (150-207)||(18292205-18292262)
chr2 (150-219)||(40728879-40728947)
chr2 (150-208)||(44789194-44789252)
chr2 (150-219)||(28266601-28266669)
chr2 (163-207)||(34397317-34397361)
chr2 (157-208)||(29271277-29271328)
chr2 (1-64)||(34397461-34397523)
chr2 (168-208)||(23827850-23827890)
chr2 (1-45)||(28266773-28266816)
[»] chr6 (13 HSPs)
chr6 (11-223)||(32449711-32449923)
chr6 (11-223)||(34636736-34636948)
chr6 (47-223)||(23260096-23260270)
chr6 (9-223)||(24164333-24164552)
chr6 (11-118)||(20558043-20558150)
chr6 (9-219)||(13772859-13773091)
chr6 (152-223)||(10751074-10751145)
chr6 (114-223)||(20559450-20559555)
chr6 (11-86)||(10751147-10751217)
chr6 (150-220)||(26182141-26182211)
chr6 (158-208)||(31276842-31276892)
chr6 (166-208)||(31275994-31276036)
chr6 (168-208)||(11166113-11166153)
[»] chr5 (10 HSPs)
chr5 (11-223)||(537369-537581)
chr5 (76-219)||(42861984-42862131)
chr5 (173-219)||(38001690-38001736)
chr5 (150-208)||(40691563-40691621)
chr5 (10-54)||(42861892-42861936)
chr5 (150-219)||(4557454-4557523)
chr5 (168-219)||(23211155-23211206)
chr5 (10-64)||(4557610-4557664)
chr5 (173-219)||(30910469-30910515)
chr5 (157-197)||(27027050-27027089)
[»] chr3 (11 HSPs)
chr3 (11-223)||(7336137-7336351)
chr3 (10-223)||(16975868-16976079)
chr3 (10-223)||(5004174-5004389)
chr3 (11-223)||(46404045-46404258)
chr3 (10-219)||(9104651-9104854)
chr3 (10-201)||(11937353-11937547)
chr3 (151-219)||(8731431-8731499)
chr3 (151-219)||(9083318-9083386)
chr3 (150-219)||(17542154-17542223)
chr3 (150-219)||(43277492-43277562)
chr3 (168-208)||(5704621-5704661)
[»] scaffold0413 (1 HSPs)
scaffold0413 (33-223)||(1-193)
[»] scaffold0041 (2 HSPs)
scaffold0041 (10-223)||(32790-32990)
scaffold0041 (185-216)||(22493-22524)
[»] chr8 (6 HSPs)
chr8 (98-223)||(35840786-35840911)
chr8 (10-205)||(40840984-40841184)
chr8 (150-219)||(41957907-41957975)
chr8 (156-219)||(6150213-6150276)
chr8 (150-207)||(44436790-44436847)
chr8 (168-208)||(12659399-12659439)
[»] scaffold0657 (1 HSPs)
scaffold0657 (148-223)||(1783-1858)
[»] scaffold1838 (1 HSPs)
scaffold1838 (150-219)||(875-944)
[»] scaffold0013 (1 HSPs)
scaffold0013 (156-197)||(242518-242559)
[»] scaffold0120 (1 HSPs)
scaffold0120 (168-208)||(2183-2223)
[»] scaffold0069 (1 HSPs)
scaffold0069 (168-208)||(11403-11443)
[»] scaffold0002 (1 HSPs)
scaffold0002 (168-208)||(356423-356463)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 40459499 - 40459712
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  40459499 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttattcatctgtgtgttgataagtgattaaactg 40459598  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40459599 ttatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 40459698  T
Q  210 tggcattgttcttg 223  Q
    ||||||||||||||    
T  40459699 tggcattgttcttg 40459712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 49499602 - 49499813
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  49499602 ttatatccagatcatgtagaatttaagagcatgcattttacacataattgcattgcattgggtctgttatacatttgtgtgttgataagtgattaaacta 49499701  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaag------acttaaatgtatttttcttatttctttttgattgagaagttttgatactatct 203  Q
    ||||| |  |||||||||| | | ||||| |||  ||||||      |||| |||||||||||||||||||||||| |||||||||||||||||  ||||    
T  49499702 ttata-aagcaaaagaaat-tgtgtgaacctta--ttaaagcatataacttgaatgtatttttcttatttctttttaattgagaagttttgatatgatct 49499797  T
Q  204 attttgtggcattgtt 219  Q
    ||||| || |||||||    
T  49499798 attttatgacattgtt 49499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 2761767 - 2761543
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatc-------------tgtgtgttgata 96  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||             | ||||||||||    
T  2761767 ttatatccgaatcatttagtatttaagagcatgcattttacacatgattgcattgcattgtgtctgttatacatcggtgtgttatacatatgtgttgata 2761668  T
Q  97 agtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgagaagt 190  Q
    |||||||||||| ||||  || |||||||||||| |||||||||||| | |||      || || |||||||||||||||||||||||||||||||||||    
T  2761667 agtgattaaactattat-gatgcaaaagaaatgtgtatgaactttacttaaaagcatatgatttgaatgtatttttcttatttctttttgattgagaagt 2761569  T
Q  191 tttgatactatctattttgtggcatt 216  Q
    || ||||||||||||||| |||||||    
T  2761568 ttagatactatctattttatggcatt 2761543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 55162879 - 55162948
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||| || |||||||    
T  55162879 gacttgaatgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtt 55162948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 41869372 - 41869422
Alignment:
Q  166 tcttatttctttttgattgagaagttttgatactatctattttgtggcatt 216  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  41869372 tcttatttctttttgattgagaagttttgatattatctatttcgtgacatt 41869422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 28968757 - 28968699
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||| ||||||||||||||| ||| |||| ||||  ||||||||||| ||||||||||    
T  28968757 gacttgaatgtatttttcttaattcgtttttattggtaagttttgatattatctatttt 28968699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 70014 - 70046
Alignment:
Q  176 ttttgattgagaagttttgatactatctatttt 208  Q
    |||||||||||||||||||||| ||||||||||    
T  70014 ttttgattgagaagttttgatattatctatttt 70046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 10276754 - 10276794
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  10276754 ttatttctttttgatcgagaagattttatactatctatttt 10276794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 10288448 - 10288236
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  10288448 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttattcatctgtgtgttgataagtgattaaactgt 10288349  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288348 tatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 10288249  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  10288248 ggcattgttcttg 10288236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 15873632 - 15873421
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  15873632 tatatccggatcatgtagtatttaagagcatgcattttgcatatcattgcattgcattgggtctgttatacatttgtgtgttgataagtgattaaactgt 15873533  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873532 tatatatacaaaagaaatgtgtatgaactttacctt-aagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 15873434  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  15873433 ggcattgttcttg 15873421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 11036027 - 11035828
Alignment:
Q  24 tgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactcttatatatacaaaa 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  11036027 tgtagtatctaagagcatgcattttacacaacattgcattgcattgggtctgttatacatctgtgtgttgataagtgattatactgttatatatacaaaa 11035928  T
Q  124 gaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035927 gaaatgtgtatgaactttacctcaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 11035828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 22078176 - 22078388
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||  |    
T  22078176 tatatccggatcatatagtatttaagagcatgtattttacacatcattgcattgcattaggtctgttatacatctatgtgttgataagtgattaaacatt 22078275  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22078276 tatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttctgattgagaagttttgatactatctattttgt 22078375  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  22078376 ggcattgttcttg 22078388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 9993873 - 9994083
Alignment:
Q  13 tatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactctta 112  Q
    ||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||||| |  ||    
T  9993873 tatccggatcatgtagtatttaaaagcatgcattttacacggcattgcattgcattgggtctgttatacatttttgtgttgataagtgattaaattggta 9993972  T
Q  113 tatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtgg 212  Q
    |||| ||||||||||||| ||||||||||||||||||||||||  |||||||||||| |||  |||| ||||||||||||||||||||||||||||||||    
T  9993973 tataaacaaaagaaatgtgtatgaactttaccttaaagacttatgtgtatttttctttttttctttttattgagaagttttgatactatctattttgtgg 9994072  T
Q  213 cattgttcttg 223  Q
    |||||||||||    
T  9994073 cattgttcttg 9994083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 18366988 - 18366776
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||     
T  18366988 ttatatccggatcatgtagaatctaagagcatgcattttacacataattgcattgcattgggtctgttatacatttgtgtgtggataagtgattaaacta 18366889  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaag------acttaaatgtatttttcttatttctttttgattgagaagttttgatactatct 203  Q
    ||||| |  |||||||||| | | ||||  |||  ||||||      |||| |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  18366888 ttata-aagcaaaagaaat-tgtgtgaagctta-tttaaagcatataacttgaatgtattttccttatttctttttaattgagaagttttgatactatct 18366792  T
Q  204 attttgtggcattgtt 219  Q
    ||||| || |||||||    
T  18366791 attttatgacattgtt 18366776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 21491154 - 21490938
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  21491154 ttatttccggatcatgtagaatctaaaagcatgcaatttacacataattgcattgcattgggtctgttatacatttgtgtgttgataagtgattaaacta 21491055  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaag------acttaaatgtatttttcttatttctttttgattgagaagttttg----atact 199  Q
    ||||| |  |||||||||| | | ||||| |||  ||||||      |||| |||||||||| ||||||||||||| ||||||||||||||    |||||    
T  21491054 ttata-aagcaaaagaaat-tgtgtgaacctta-tttaaagcatataacttgaatgtattttccttatttctttttaattgagaagttttgatatatact 21490958  T
Q  200 atctattttgtggcattgtt 219  Q
    ||||||||| || |||||||    
T  21490957 atctattttatgacattgtt 21490938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 48653504 - 48653285
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctg--------------------ttatacatctgtgt 89  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||                    |||| |||||||||    
T  48653504 ttatatccggatcatgtagtatttaagagcttgcattttacacataattgcattgcattgggtctgctatatacatatgtgtgtctttattcatctgtgt 48653405  T
Q  90 gttgataagtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgatt 183  Q
    ||||||||||| ||||||| ||||| || |||||||||||| |||||||||||| | |||      ||||| |||||| ||||||||  |||||||||||    
T  48653404 gttgataagtg-ttaaactattata-atgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgaatgta-ttttcttaaatctttttgatt 48653308  T
Q  184 gagaagttttgatactatctatt 206  Q
    |||||||||||||| ||||||||    
T  48653307 gagaagttttgatattatctatt 48653285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 40106499 - 40106568
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||    
T  40106499 gacttgaatgtatttttcttatatctttttgattgagaagttttgatactatctattttatgacattgtt 40106568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 3691932 - 3692083
Alignment:
Q  61 attgcattgggtctgttatacatctgtgtgttgataagtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa-----gactta 155  Q
    ||||||||| || ||||||  |||||||  || |||| |||||||||| |||||| | |||| ||||||| | |||||||| | | |||     |||||     
T  3691932 attgcattgagtttgttatttatctgtgatttcataattgattaaactattatat-tgcaaaggaaatgtgtctgaacttttcttaaaacgtatgacttg 3692030  T
Q  156 aatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3692031 aatgtatttttcttatttctttttgattgagaagttttgataccatctatttt 3692083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 24056770 - 24056707
Alignment:
Q  156 aatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||    
T  24056770 aatgtatttttcttatttctttttgattgagaagttttgatattatctattttatgacattgtt 24056707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 49169858 - 49169789
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||| || |||||||    
T  49169858 gacttgaatgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtt 49169789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 12196273 - 12196216
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattt 207  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||| || |||||||||    
T  12196273 gacttgaatgtatttttcttaattctttttgattgataagttttgctattatctattt 12196216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 12911226 - 12911181
Alignment:
Q  174 ctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  12911226 ctttttgattgagaagttttgatactatctattttatgacattgtt 12911181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 9554644 - 9554608
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatcta 204  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9554644 ttatttctttttgattaagaagttttgatactatcta 9554608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 13163792 - 13163723
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| || ||| |||||||| |||||||| ||||| ||||||||||| |||||| ||| || |||||||    
T  13163792 gacttgaaagtaattttcttaattcttttttattgataagttttgatattatctaatttatgacattgtt 13163723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40106351 - 40106414
Alignment:
Q  1 tggcgggaattatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgc 65  Q
    |||||||||||||||||| ||||| |||| | |||||||||| || |||| ||| ||||||||||    
T  40106351 tggcgggaattatatccgaatcatatagt-tataagagcatgtatcttacgcataattgcattgc 40106414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 43407024 - 43406812
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  43407024 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttattcatctgtgtgttgataagtgattaaactgt 43406925  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43406924 tatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 43406825  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  43406824 ggcattgttcttg 43406812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 338656 - 338869
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  338656 ttatatccggatcatgtagtacctaagagcatgcattttacacatcattgcattgcattgggtctgttattcatctgtgtgttgataagtgattaaactg 338755  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  338756 ttatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttgtttctttttgattgagaagttttgatactatctattttg 338855  T
Q  210 tggcattgttcttg 223  Q
    ||||||||||||||    
T  338856 tggcattgttcttg 338869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 37666835 - 37666624
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |    
T  37666835 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcactgcattgggtctgttatacatatgtgtgttgataagtgattaaacttt 37666736  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  37666735 tatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttaattc-ttttgattgagaagttttgatactatctattttgt 37666637  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  37666636 ggcattgttcttg 37666624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 6836446 - 6836656
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||     
T  6836446 ttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcattgcattgagtctgttatacatctgtgtgttgataa---attaaactg 6836542  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6836543 ttatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 6836642  T
Q  210 tggcattgttcttg 223  Q
    ||||||||||||||    
T  6836643 tggcattgttcttg 6836656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 18472595 - 18472391
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||         |||| ||||| ||||||||||||||||||||||     
T  18472595 ttatatccggatcatgtagtatttaagagcatacattttacacataattgcattgca---------ttattcatctatgtgttgataagtgattaaacta 18472505  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatct 203  Q
    ||||| |  |||||||||||| |||||||||||| | |||      ||||| |||||| |||||| |  |||||||||||||||||||||||||||||||    
T  18472504 ttata-aagcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgaatgta-ttttctaaaatctttttgattgagaagttttgatactatct 18472407  T
Q  204 attttgtggcattgtt 219  Q
    ||||| || |||||||    
T  18472406 attttatgacattgtt 18472391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 33007316 - 33007101
Alignment:
Q  1 tggcgggaattatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtg 100  Q
    |||||||||||||||||||||||| |||| | ||||||||||||| |||| ||| |||||||||      ||| ||| || || ||||||||||||||||    
T  33007316 tggcgggaattatatccggatcatatagt-tataagagcatgcatcttacgcataattgcattga-----gtcagttgtatatttgtgtgttgataagtg 33007223  T
Q  101 attaaactcttatatatacaaaagaaatgtatatgaactttaccttaaag------acttaaatgtatttttcttatttctttttgattgagaagttttg 194  Q
    |||||||| ||||| ||||||   |||||| | |||| |||  |||||||      ||||||||||| ||||||||||||||||||||||||||||||||    
T  33007222 attaaactattata-atacaaggaaaatgtgtgtgaatttt--cttaaaggatatgacttaaatgtacttttcttatttctttttgattgagaagttttg 33007126  T
Q  195 atactatctattttgtggcattgtt 219  Q
    ||| |||||||||| || |||||||    
T  33007125 atattatctattttatgacattgtt 33007101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 35761710 - 35761484
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctg------------------ttatacatctgtgtgtt 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                  |||| ||||||||||||    
T  35761710 tatatccggatcatgtagtatctaagagcatacattttacacatcattgcattgcattgggtctgctatacatatgtgtgtctttattcatctgtgtgtt 35761611  T
Q  93 gataagtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgag 186  Q
    |||||||||||||||| ||||| || |||||||||||| |||||||| ||| | |||      ||||| ||||||||||| |||  ||||||||||| ||    
T  35761610 gataagtgattaaactattata-atgcaaaagaaatgtgtatgaactctacttaaaagcatatgacttgaatgtattttt-ttaaatctttttgattcag 35761513  T
Q  187 aagttttgatactatctattttgtggcat 215  Q
    |||||||||||  ||||||||| ||||||    
T  35761512 aagttttgatatcatctattttatggcat 35761484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 19198321 - 19198252
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||    
T  19198321 gacttaaatgtatttttcttaattctttttaattgagaagttttgatactatctattttatgacattgtt 19198252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 9536864 - 9536795
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||| || |||||||    
T  9536864 gacttgaatgtatttttcttaattctttttgattgataagttttgatattatctattttatgacattgtt 9536795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 24276088 - 24276147
Alignment:
Q  164 tttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
    ||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  24276088 tttcttatttccttttgatcgagaagttttgatgctatctactttgtggcattgttcttg 24276147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 8422252 - 8422313
Alignment:
Q  158 tgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |||| |||||||| |||||||||||||| ||||||||||| |||||||||| || |||||||    
T  8422252 tgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtt 8422313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 24055767 - 24055712
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
    ||||||| ||||||| |||||||||||||  |||||| ||||||||||||||||||    
T  24055767 ttatttccttttgatcgagaagttttgatgttatctactttgtggcattgttcttg 24055712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 36386423 - 36386378
Alignment:
Q  12 atatccggatcatgtagtatctaagagcatgcattttacacatcat 57  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||    
T  36386423 atatccagatcatgtagtatttaagagcatgcattttacagatcat 36386378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 16075398 - 16075448
Alignment:
Q  158 tgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||| |||||||| ||| |||||||||||||  |||||||||    
T  16075398 tgtatttttcttaattcttttttattaagaagttttgatatcatctatttt 16075448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 40448029 - 40448242
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  40448029 ttatatccggatcatgtagtacctaagagcatgcattttacacatcattgcattgcattgggtctgttattcatctgtgtgttgataagtgattaaactg 40448128  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40448129 ttatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 40448228  T
Q  210 tggcattgttcttg 223  Q
    ||||||||||||||    
T  40448229 tggcattgttcttg 40448242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 41339918 - 41339720
Alignment:
Q  1 tggcgggaattatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  41339918 tggcgggcattatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattg-----ggtctgttatacatctgtgtgttgataagtg 41339824  T
Q  101 attaaactcttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatacta 200  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||    
T  41339823 attaaatttttatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttattatttcttttttattgataagttttgatatta 41339724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 12774097 - 12773883
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    ||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||||||||||||||||||||||     
T  12774097 ttatatctggatcatgtagtatttaagagcatgcattttacacataatcgcattgcattgagtctgttatgcatttgtgtgttgataagtgattaaacta 12773998  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatct 203  Q
    ||||| ||||||| ||||||| | ||||||||||||||||      ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12773997 ttata-atacaaaggaaatgtgtgtgaactttaccttaaagaatatgacttaaatgtatttttcttaattctttttgattgagaagttttggtactatct 12773899  T
Q  204 attttgtggcattgtt 219  Q
    || || || |||||||    
T  12773898 atcttatgacattgtt 12773883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 35670440 - 35670217
Alignment:
Q  18 ggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctg------------------ttatacatctgtgtgttgataagt 99  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||                  |||| ||||||||||||||||| |    
T  35670440 ggatcatgtagtatttaagagcatgcattttacacataattgcattgcattgggtctgctatatatatgtgtgtccttattcatctgtgtgttgataact 35670341  T
Q  100 gattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgagaagtttt 193  Q
    ||||||||| ||||| |  |||||||||||| |||||||||||| | |||      ||||| |||||| ||||||||  |||||||||||||||||||||    
T  35670340 gattaaactattata-acgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgaatgta-ttttcttaaatctttttgattgagaagtttt 35670243  T
Q  194 gatactatctattttgtggcattgtt 219  Q
    ||||||||||||||| || |||||||    
T  35670242 gatactatctattttatgacattgtt 35670217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 36731889 - 36731835
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattg 64  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  36731889 ttatatctggatcatgtagtatttaagagcatgcattttacacagcattgcattg 36731835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 18292262 - 18292205
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattt 207  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  18292262 gacttgaatgtatttttcttaattctttttgattgataagttttgatattatctattt 18292205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 40728947 - 40728879
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||| || |||||||    
T  40728947 gacttgaatgtatttt-cttaaatctttttgattgagaagttttgatactatctattttatgacattgtt 40728879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 44789194 - 44789252
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||| ||||||||||| ||| ||||| |||||||| ||||||||||| ||||||||||    
T  44789194 gacttgaatgtatttttattaattcttgttgattgataagttttgatattatctatttt 44789252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 28266669 - 28266601
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||||||| |||| ||||||||||||||||||| |||||| | |||||||| || |||||||    
T  28266669 gacttgaatgtatttt-cttaattctttttgattgagaagtgttgatattgtctattttatgacattgtt 28266601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 34397361 - 34397317
Alignment:
Q  163 ttttcttatttctttttgattgagaagttttgatactatctattt 207  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||    
T  34397361 ttttcttaattctttttgattgataagttttgatattatctattt 34397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 29271277 - 29271328
Alignment:
Q  157 atgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||||  | |||||||||||| |||||||| ||||||||||    
T  29271277 atgtatttttcttattcatgtttgattgagaatttttgatattatctatttt 29271328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34397523 - 34397461
Alignment:
Q  1 tggcgggaattatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattg 64  Q
    ||||||||||||||| |||||||| |||| | ||||||||||||| |||| ||| |||||||||    
T  34397523 tggcgggaattatattcggatcatatagt-tataagagcatgcatcttacgcataattgcattg 34397461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 23827890 - 23827850
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  23827890 ttatttctttttgatcgagaagattttatactatctatttt 23827850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28266816 - 28266773
Alignment:
Q  1 tggcgggaattatatccggatcatgtagtatctaagagcatgcat 45  Q
    |||||||||||||||||||||||| |||| | |||||||||||||    
T  28266816 tggcgggaattatatccggatcatatagt-tataagagcatgcat 28266773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 32449923 - 32449711
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |    
T  32449923 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattggattgagtctgttatacatttgtgtgttgataagtgattaaactgt 32449824  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32449823 tatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 32449724  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  32449723 ggcattgttcttg 32449711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 34636736 - 34636948
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  34636736 tatatccggatcatgtagtatttaagagcatgcattttgcacatcattgcattgcattgggtctgttatacatttgtgtgttgataagtgattaaactgt 34636835  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636836 tatatatacaaaagaaatgtgtatgaactttatcttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 34636935  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  34636936 ggcattgttcttg 34636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 23260270 - 23260096
Alignment:
Q  47 ttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactcttatatatacaaaagaaatgtatatgaactttacctt 146  Q
    |||||||||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  23260270 ttacacatcattacattgcattaggtctgttttacatctgtgt--tgataagtgattaaactgttatatatacaaaagaaatgtgtatgaactttacctt 23260173  T
Q  147 aaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
    ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23260172 aaatacttaaatgtatttttcttatttcttttttattgagaagttttgatactatctattttgtggcattgttcttg 23260096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 24164333 - 24164552
Alignment:
Q  9 attatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaact 108  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||||||||| ||||||||||    
T  24164333 attatatctggatcatgtagtatttaagagcatgtattttacacataattgcattgcatttggtctgttatacatttatgtgttgataattgattaaact 24164432  T
Q  109 cttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatc 202  Q
     ||||| || |||||||||||| | | ||||||||||| ||      ||||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  24164433 attata-atgcaaaagaaatgtgtgtaaactttaccttgaagcatatgactttaatgtatttttcttattttttcttgattgagaagttttgatactatc 24164531  T
Q  203 tattttgtggcattgttcttg 223  Q
    |||||| || |||||||||||    
T  24164532 tattttatgacattgttcttg 24164552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 20558043 - 20558150
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |    
T  20558043 tatatccggatcatgtagtatttaagagcatgtgttttatacatcattgcattgcattgggtctgttgtacatatgtgtgttgataagtgattaaactgt 20558142  T
Q  111 tatatata 118  Q
    ||||||||    
T  20558143 tatatata 20558150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 13773091 - 13772859
Alignment:
Q  9 attatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctg------------------ttatacatctgtgtg 90  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| ||||                  |||| ||||||||||    
T  13773091 attatatccggatcatgtagtatttaagagcatgcattttacacataattgcattacattggatctgctatacatatgtgtgtctttattcatctgtgtg 13772992  T
Q  91 ttgataagtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattg 184  Q
    |||||||||||||||||| ||||| || |||||||||||| |||||||||||| | |||      |||||  ||||| ||||||||  ||||||||||||    
T  13772991 ttgataagtgattaaactattata-atgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgtatgta-ttttcttaaatctttttgattg 13772894  T
Q  185 agaagttttgatactatctattttgtggcattgtt 219  Q
    ||||||||||||| ||||||| || || |||||||    
T  13772893 agaagttttgatattatctatattatgacattgtt 13772859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 10751145 - 10751074
Alignment:
Q  152 cttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  10751145 cttaaatgtatttttcttatttcttttttattgagaagttttgatactatctattatgtggcattgttcttg 10751074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 20559450 - 20559555
Alignment:
Q  114 atatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggc 213  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||| |   ||||||||||||||||||||||||||||||| || |||||| ||| ||||    
T  20559450 atatataaaagaaatgtgtatgcactttaccttaaagacttaaatat---tttcttatttctttttgattgagaagttttggtagtatcta-tttatggc 20559545  T
Q  214 attgttcttg 223  Q
    ||||||||||    
T  20559546 attgttcttg 20559555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 10751217 - 10751147
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctg 86  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||     |||||||||||||||||||||    
T  10751217 tatatccggatcatgtagtatttaagagcatgcattttgcacatcattgc-----attgggtctgttatacatctg 10751147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 26182211 - 26182141
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttc 220  Q
    ||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||  || ||||||||    
T  26182211 gacttgaatgtaattttcttaattctttttgattgataagttttgatattatctatttcatgacattgttc 26182141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 31276842 - 31276892
Alignment:
Q  158 tgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  31276842 tgtatcttttttatttcttttttattgagaagttttgatactatctatttt 31276892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 31276036 - 31275994
Alignment:
Q  166 tcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  31276036 tcttatttctttttgatcgagaagttttgatattatctatttt 31275994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 11166153 - 11166113
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  11166153 ttatttctttttgatcgagaagattttatactatctatttt 11166113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 537369 - 537581
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |    
T  537369 tatatccggatcatgtagtatataagagcatgcattttgcacatcattgcattgcattgggtctgttatacatttctgtgttgataagtgattaaactgt 537468  T
Q  111 tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 210  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537469 tatatatacaaaagaaatgtgtatgaactttatcttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgt 537568  T
Q  211 ggcattgttcttg 223  Q
    |||||||||||||    
T  537569 ggcattgttcttg 537581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 42861984 - 42862131
Alignment:
Q  76 ttatacatctgtgtgttgataagtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttctt 169  Q
    |||| ||||| |||||||||||||||||||||| ||||| || |||||||||||| |||||||||||| | |||      |||||||||||||||| |||    
T  42861984 ttattcatctctgtgttgataagtgattaaactattata-atgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttaaatgtatttt-ctt 42862081  T
Q  170 atttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |  |||||||||||||||||||||||||||||||||||| || |||||||    
T  42862082 aaatctttttgattgagaagttttgatactatctattttatgacattgtt 42862131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 38001690 - 38001736
Alignment:
Q  173 tctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |||||||||||||||||||||||||||||||||||| || |||||||    
T  38001690 tctttttgattgagaagttttgatactatctattttatgacattgtt 38001736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 40691563 - 40691621
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||    
T  40691563 gacttgaatgtatttttcttaattctttttgattgataagttttaatattatctatttt 40691621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 42861892 - 42861936
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacat 54  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||    
T  42861892 ttatatccagatcatgtagtatttaagagcatgcattttacacat 42861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 4557523 - 4557454
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||| |||||||||| ||||||||||| |  ||||||||||| |||||||||| || |||||||    
T  4557523 gacttgaatgcatttttcttaattctttttgataggtaagttttgatattatctattttatgacattgtt 4557454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 23211155 - 23211206
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |||||| ||||| || ||||| ||||||||||||||| ||||||||||||||    
T  23211155 ttatttattttttatcgagaaattttgatactatctactttgtggcattgtt 23211206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 4557664 - 4557610
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattg 64  Q
    ||||||| ||| ||||||| |||||||||||||||| |||| ||| |||||||||    
T  4557664 ttatatctggaccatgtagaatctaagagcatgcatcttacgcataattgcattg 4557610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 30910469 - 30910515
Alignment:
Q  173 tctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||||||||||||||||||||||| |||||| ||| || |||||||    
T  30910469 tctttttgattgagaagttttgatattatctactttatgacattgtt 30910515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 27027050 - 27027089
Alignment:
Q  157 atgtatttttcttatttctttttgattgagaagttttgata 197  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  27027050 atgtatttttcttaatt-tttttgattgagaagttttgata 27027089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 7336351 - 7336137
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  7336351 tatatccggatcatgtagtatctaagagcatgcattttgcacatcattgcattgcattgggtctgttatacatctgtgtgttgataaatgattaaactgt 7336252  T
Q  111 tatatata--caaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336251 tatatatatacaaaggaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 7336152  T
Q  209 gtggcattgttcttg 223  Q
    |||||||||||||||    
T  7336151 gtggcattgttcttg 7336137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 16975868 - 16976079
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||     
T  16975868 ttatatccggatcatgtactatttaagagcatgcattttacacatcattgcattgcattgggtctattatacatctgtg--ttgataagtgattaaactg 16975965  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 209  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975966 ttatatatacaaaataaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 16976065  T
Q  210 tggcattgttcttg 223  Q
    ||||||||||||||    
T  16976066 tggcattgttcttg 16976079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 5004389 - 5004174
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||     
T  5004389 ttatatccggatcatgtagtatttaagagcatgcattttgcacatcattgcattgcattgggtctataatacatctgtgtgttgataaatgattaaactg 5004290  T
Q  110 ttat--atatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattt 207  Q
    ||||  |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004289 ttatgtatataccaaggaaatgtgtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattt 5004190  T
Q  208 tgtggcattgttcttg 223  Q
    ||||| ||||||||||    
T  5004189 tgtggtattgttcttg 5004174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 46404258 - 46404045
Alignment:
Q  11 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactct 110  Q
    ||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |    
T  46404258 tatatccggatcatgtagtatttaagagcatgcgttttgcatatcattgcattgcattgggtctgttatacatctgtctgttgataaatgattaaactgt 46404159  T
Q  111 --tatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
      |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46404158 tgtatatatacaaaggaaatgtgtatgaactttaccttaaagacttaaatgta-ttttcttatttctttttgattgagaagttttgatactatctatttt 46404060  T
Q  209 gtggcattgttcttg 223  Q
     ||||||||||||||    
T  46404059 atggcattgttcttg 46404045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 9104651 - 9104854
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||||||||||||||||     
T  9104651 ttatatccggatcatgtagtatttaagagcatgcattttacacatcatt-----gcattgggtctgttatacatatgtgtgttgataagtgattaaactg 9104745  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttg 209  Q
    |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||     
T  9104746 ttatatatacaacagaaatgtgtatgaactttaccttaaa-acttaaatgtatttttcttatttctttttgattgagaagtttcgatactatttatttta 9104844  T
Q  210 tggcattgtt 219  Q
    ||||||||||    
T  9104845 tggcattgtt 9104854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 11937547 - 11937353
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    ||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  11937547 ttatatccggatcatgtagaatataagaacatgcattttacacataattgcattgcattgggtctgttatacatttgtgtgttgataagtgattaaacta 11937448  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaag------acttaaatgtatttttcttatttctttttgattgagaagttttgatactat 201  Q
    ||||| |  |||||||||| | | ||||| |||  ||||||      |||| |||||||||| ||||||||||||| |||||||||||||||||||||    
T  11937447 ttata-aagcaaaagaaat-tgtgtgaacctta-tttaaagcatataacttgaatgtattttccttatttctttttaattgagaagttttgatactat 11937353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 8731431 - 8731499
Alignment:
Q  151 acttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  8731431 acttcaatgtatttttctaatttctttttgattgataagtcttgatactatctattttatggcattgtt 8731499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 9083318 - 9083386
Alignment:
Q  151 acttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    |||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  9083318 acttcaatgtatttttctaatttctttttgattgataagtcttgatactatctattttatggcattgtt 9083386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 17542223 - 17542154
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| ||||||||||||||| |||||||||||||  ||||||||||| |||||||||| || |||||||    
T  17542223 gacttgaatgtatttttcttaattctttttgattggtaagttttgatattatctattttatgacattgtt 17542154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 43277562 - 43277492
Alignment:
Q  150 gacttaaatgtattttt-cttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| ||||||||||| |||| || ||||| ||||| |||||||||||||||||||||| || |||||||    
T  43277562 gacttgaatgtattttttcttaatttttttttattgataagttttgatactatctattttatgacattgtt 43277492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 5704621 - 5704661
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  5704621 ttatttctttttgatcgagaagattttatactatctatttt 5704661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 1 - 193
Alignment:
Q  33 taagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactcttata--tatacaaaagaaatgt 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||  |||||||| |||||||    
T  1 taagagcatgcattttgcacatcattgcattgcattgggtctgttatacatctgtgtgttgataaatgattaaactgttatatatatacaaaggaaatgt 100  T
Q  131 atatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  101 gtatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 32990 - 32790
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||             ||||||     
T  32990 ttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcattgcattgagtctgttatacatctgtgt-------------taaacta 32904  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtat-ttttcttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||| |||||| |||| |||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  32903 ttatatataaaaaagatatgtgtatgaactttaccttaaa-acttaaatgtatctttttttatctctttttgattgagaagttttgatactatctatttt 32805  T
Q  209 gtggcattgttcttg 223  Q
    ||||| |||||||||    
T  32804 gtggctttgttcttg 32790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 22493 - 22524
Alignment:
Q  185 agaagttttgatactatctattttgtggcatt 216  Q
    ||||||||||||||||||||||||||||||||    
T  22493 agaagttttgatactatctattttgtggcatt 22524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 35840786 - 35840911
Alignment:
Q  98 gtgattaaactcttatatatacaaaagaaatgtatatgaactttaccttaaagacttaaatgtatttttcttatttctttttgattgagaagttttgata 197  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  35840786 gtgattaaactgttatatatacaaaagaaatgtgtatgaactttaccttaaagacttaaatgtatttttcctatttctttttaattgagaagttttgata 35840885  T
Q  198 ctatctattttgtggcattgttcttg 223  Q
    ||||||||||||||||||||||||||    
T  35840886 ctatctattttgtggcattgttcttg 35840911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 40841184 - 40840984
Alignment:
Q  10 ttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattgcattgggtctgttatacatctgtgtgttgataagtgattaaactc 109  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||||||| ||| ||| ||||||||||||||||||||||||     
T  40841184 ttatatccggatcatgtagtatttaagagcatacattttacacataatcgcattgcattgggtctgctatgcatttgtgtgttgataagtgattaaacta 40841085  T
Q  110 ttatatatacaaaagaaatgtatatgaactttaccttaaa------gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatct 203  Q
    ||||| ||||||| ||||||| | ||||||||| ||||||      || || |||||| |||||||| ||||||||| ||||||||||||| ||||||||    
T  40841084 ttata-atacaaaggaaatgtgtgtgaactttaacttaaagaatatgaattgaatgtaattttcttaattctttttgtttgagaagttttggtactatct 40840986  T
Q  204 at 205  Q
    ||    
T  40840985 at 40840984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 41957975 - 41957907
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||| || |||||||    
T  41957975 gacttgaatgtatttt-cttaaatctttttgattgagaagttttgatactatctattttatgacattgtt 41957907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6150213 - 6150276
Alignment:
Q  156 aatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||||||||||||| |||||||||||||  ||||||||||| |||||||||| || |||||||    
T  6150213 aatgtatttttcttaattctttttgattggtaagttttgatattatctattttatgacattgtt 6150276  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 44436790 - 44436847
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattt 207  Q
    ||||| ||||||||||| ||| |||||||||||||| ||||||||||| |||||||||    
T  44436790 gacttgaatgtattttttttaattctttttgattgataagttttgatattatctattt 44436847  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 12659439 - 12659399
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  12659439 ttatttctttttgatcgagaagattttatactatctatttt 12659399  T

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Target: scaffold0657 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 1858 - 1783
Alignment:
Q  148 aagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1858 aagacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgttcttg 1783  T

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Target: scaffold1838 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 875 - 944
Alignment:
Q  150 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt 219  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| | |||| ||| || |||||||    
T  875 gacttgaatgtatttttcttatttctttttgattgataagttttgatattttctactttatgacattgtt 944  T

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Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 242559 - 242518
Alignment:
Q  156 aatgtatttttcttatttctttttgattgagaagttttgata 197  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  242559 aatgtatttttcttaattctttttgattgagaagttttgata 242518  T

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Target: scaffold0120 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 2223 - 2183
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  2223 ttatttctttttgatcgagaagattttatactatctatttt 2183  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 11403 - 11443
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    |||||||||||||||||||||  ||| ||||||||||||||    
T  11403 ttatttctttttgattgagaaaattttatactatctatttt 11443  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 356463 - 356423
Alignment:
Q  168 ttatttctttttgattgagaagttttgatactatctatttt 208  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  356463 ttatttctttttgatcgagaagattttatactatctatttt 356423  T

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