View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_89 (Length: 236)
Name: NF18071_low_89
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 53006756 - 53006537
Alignment:
| Q |
3 |
aaattctaacacactcataaccattccaaacatgcacttactatcccaccttttttcctatatgaaattctcaccatgtaacctttatccctttgccgat |
102 |
Q |
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| T |
53006756 |
aaattctaacacactcataaccattccaaacatgcacttactatcccaccttttttcctatctgaaattctcaccatgtaacctttatccctttgccgat |
53006657 |
T |
|
| Q |
103 |
gccaatcaaatccttaacttcttccccaatttcattcttgaatagatagtgtaatggataattgaattccgcactataaattaaatatattatcttgagc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53006656 |
gccaatcaaatccttaacttcttccccaatttcattcttgaatagatagtgtaatggataattgaattccgcactataaattaaatatattatcttgagc |
53006557 |
T |
|
| Q |
203 |
aattctagacccctacaact |
222 |
Q |
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|||||||||||||||||||| |
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| T |
53006556 |
aattctagacccctacaact |
53006537 |
T |
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