View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_high_11 (Length: 369)
Name: NF18072_high_11
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_high_11 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 8040883 - 8040541
Alignment:
| Q |
1 |
aaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttagatggctagagtactgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
8040883 |
aaattaacatatacatataaacatcaattgaatataaataaaagagaaggatcgataaacttatatgtccttaataattttatatagctagagtactgac |
8040784 |
T |
|
| Q |
101 |
ataactctgtcaatatcttcaccaacaacttatatgtaacttgcaaaataataaacgtgacaaagtcattgttcttaaagatttataggcctcgtaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8040783 |
ataactctgtcaatatcttcaccaacaacttatatgtaacttgcaaaataataaacgtgacaaagtcattgttcttaaagatctata------------- |
8040697 |
T |
|
| Q |
201 |
tatatcagaaatgacagaacaacttgaat-tgataaacacatgagattcaacacaggattaaaatattgattg---agaagatcgttcttctgacttatt |
296 |
Q |
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||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||| |
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| T |
8040696 |
------tgaagtgacagaacaacttgaatctaataaacacatgagattcaacacaggattaaaatattgattgagaagaagatcattcttttggcttatt |
8040603 |
T |
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| Q |
297 |
atgggcactatttattttgatca----gaaggaagggaattgaataaacgtgtagaacaatt |
354 |
Q |
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| T |
8040602 |
gtgggcactatttattttgatcagaatgaaggaagggaattgaataaacgtgtagaacaatt |
8040541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 21501083 - 21501238
Alignment:
| Q |
1 |
aaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttagatggctagagtactgac |
100 |
Q |
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| T |
21501083 |
aaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaacttatatgttcttaataattttagatagctagagtactgac |
21501182 |
T |
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| Q |
101 |
ataactctgtcaatat-cttcaccaacaacttatatgtaacttgcaaaataataaa |
155 |
Q |
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| T |
21501183 |
ataactctgtcaatgtccttcaccaacaactcatatgtaacctgcaaaataataaa |
21501238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26444927 - 26445084
Alignment:
| Q |
1 |
aaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttagatggctagagtactgac |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| |
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| T |
26444927 |
aaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatctgtccttactaattttagatagctagagtactgac |
26445026 |
T |
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| Q |
101 |
ataactctgtcaatat-cttcaccaacaacttatatgtaacttgcaaaataataaacg |
157 |
Q |
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|||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26445027 |
ataactctatcaatatccttcaccaacaactcatatgtaacctgcaaaataataaacg |
26445084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 26445283 - 26445318
Alignment:
| Q |
293 |
tattatgggcactatttattttgatcagaaggaagg |
328 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
26445283 |
tattatgggcactatttattttgatcagaatgaagg |
26445318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 2353360 - 2353324
Alignment:
| Q |
120 |
caccaacaacttatatgtaacttgcaaaataataaac |
156 |
Q |
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| T |
2353360 |
caccaacaactcatatgtaacctgcaaaataataaac |
2353324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 66004 - 66159
Alignment:
| Q |
1 |
aaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttagatggctagagtactgac |
100 |
Q |
| |
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||||||| |||| |||||| ||||||||||||||||| ||||||| |||||| | || |||||| | ||||||||| |||||||| ||||| || || || |
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| T |
66004 |
aaattaatatatgcatatatacatcaattgaatataagcaaaagagaaggatggttacacttatgtatccttaatatttttagatagctagggtgctaac |
66103 |
T |
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| Q |
101 |
ataactctgtcaatatc-ttcaccaacaacttatatgtaacttgcaaaataataaa |
155 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
66104 |
ataactctgtcaatatctttcaccaacaactcatatgtaacttataaaataataaa |
66159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 27082923 - 27082991
Alignment:
| Q |
2 |
aattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtcc |
70 |
Q |
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|
||||||||||||||||| |||||||||| ||||||| ||||||| | |||| |||||||||| ||||| |
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| T |
27082923 |
aattaacatatacatatgaacatcaattaaatataagcaaaagagatagatcaataaacttatctgtcc |
27082991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 6855 - 6900
Alignment:
| Q |
202 |
atatcagaaatgacagaacaacttgaa-ttgataaacacatgagat |
246 |
Q |
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| T |
6855 |
atatcagagatgacagaacaacttgaatttgataaacacaggagat |
6900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 24045028 - 24045084
Alignment:
| Q |
212 |
tgacagaacaacttgaat-tgataaacacatgagattcaacacaggattaaaatatt |
267 |
Q |
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|||||||||||||| ||| ||||||||||| ||||| |||| ||| ||||||||||| |
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| T |
24045028 |
tgacagaacaacttaaatatgataaacacaggagatgcaacccagaattaaaatatt |
24045084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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