View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_high_13 (Length: 350)
Name: NF18072_high_13
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 51335740 - 51335425
Alignment:
| Q |
12 |
atagacaaactcttaaaaacgacatgcaattaatattttaaagagtgtttcgaaaacactcgttaacaggtccttgnnnnnnncattatttgggatacta |
111 |
Q |
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| T |
51335740 |
atagacaaactcttaaaaa-gacatgtaatcaatactttaaatagtgtttcgaaaacactagttaaaa------------aaacattatttgggatacta |
51335654 |
T |
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| Q |
112 |
ttagttacccaatggtttgttnnnnnnnnnnnnnnnctacgtaatggttacattccaaatcagcatgttgaaatctttgtcgagcaaataaaatgttgac |
211 |
Q |
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| T |
51335653 |
ttagttacctaatggtttgtt-aaaaatagaaaaaactaagtaatggttacattccaaatcagcatgttgaaatctttgtcgagcaaataaaatgttgac |
51335555 |
T |
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| Q |
212 |
acgaactccttcaatctagttacgtaaaagcactccatgtgtttctacgcacgaaaaacaatatccgaaaattcattgaaa--------gcagagacaaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51335554 |
acgaactccttcaatctagttacgtaaaagcactccatgtgtttctacgcacgaaaaacaatatccgaaaattcattgaaacaacttgggcagagacaaa |
51335455 |
T |
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| Q |
304 |
gctaacatgggtgtaatcaaatgcttaact |
333 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51335454 |
gctaacatgggtgtaatcaaatgcttaact |
51335425 |
T |
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