View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_high_14 (Length: 336)
Name: NF18072_high_14
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 6434853 - 6434945
Alignment:
| Q |
200 |
tatgtgtttataacagtctcgaacttaaaaatatattattgatacacattcatttatcacatgagcaaacaaaaaatatggaagatttttcta |
292 |
Q |
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| T |
6434853 |
tatgtgtttataacactctcaaacttaaaaatatattattgatacacattcatttatcacatgagcaaacaaaaaatatggaagatttttcta |
6434945 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 6434748 - 6434844
Alignment:
| Q |
27 |
tttgggtaaaagaaagaagtaaatggaaatgaaaaaagggacagtcccccaacataaatatggagttttatttttcataatagcacaaagtcttttt |
123 |
Q |
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| T |
6434748 |
tttgggtaaaacaaagaagtaaatggaaatgaaagaagggacagtcccccaacttaaatatggagttttatttttcaaaatagcacaaagtcttttt |
6434844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 29429757 - 29429861
Alignment:
| Q |
188 |
atctaatactaatatgtgtttataacagtctcgaacttaaaaatatattattgatacacattcatttatcacatgagcaaacaaaaaatatggaagattt |
287 |
Q |
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||||||||| | ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
29429757 |
atctaatacaagtatgtgtttataacactctcaaacttaaaaatatagtattgatacacattcatttatcacatgagcaaacaaaaaatatgaaagatat |
29429856 |
T |
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| Q |
288 |
ttcta |
292 |
Q |
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||||| |
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| T |
29429857 |
ttcta |
29429861 |
T |
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