View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18072_high_17 (Length: 305)

Name: NF18072_high_17
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18072_high_17
NF18072_high_17
[»] chr5 (9 HSPs)
chr5 (162-290)||(25957372-25957500)
chr5 (210-288)||(25928169-25928247)
chr5 (211-288)||(25910331-25910408)
chr5 (210-288)||(25887723-25887801)
chr5 (1-52)||(25957559-25957610)
chr5 (81-128)||(25957503-25957550)
chr5 (4-52)||(25957693-25957741)
chr5 (4-52)||(25957824-25957872)
chr5 (10-52)||(25957955-25957997)
[»] chr1 (1 HSPs)
chr1 (227-290)||(39088761-39088824)
[»] chr7 (1 HSPs)
chr7 (148-200)||(6563332-6563385)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 25957500 - 25957372
Alignment:
Q  162 cgtaaaaatttaaaacacatttattttaaaacggatggagtagtcgagaaagaaaacttacattggcatcaaagtcaaaacgatccacacctttccaatt 261  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25957500 cgtaaaaatttaaaatacacttattttaaaacggatggagtagtttagaaagaaaacttacattggcatcaaagtcaaaacgatccacacctttccaatt 25957401  T
Q  262 atccaaatcataggcagtaaagtgtttac 290  Q
    |||||||||||||||||||||||||||||    
T  25957400 atccaaatcataggcagtaaagtgtttac 25957372  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 25928169 - 25928247
Alignment:
Q  210 aaagaaaacttacattggcatcaaagtcaaaacgatccacacctttccaattatccaaatcataggcagtaaagtgttt 288  Q
    ||||||||||||| ||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||||    
T  25928169 aaagaaaacttactttggcatcaaaatcaaaacggtccaaacccttccaattatccaaatcataggcagtaaaatgttt 25928247  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 25910331 - 25910408
Alignment:
Q  211 aagaaaacttacattggcatcaaagtcaaaacgatccacacctttccaattatccaaatcataggcagtaaagtgttt 288  Q
    |||||||||||| |||||||||||  || |||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  25910331 aagaaaacttactttggcatcaaaaacataacgattcacacccttccaattttccaaatcataggcagtaaagtgttt 25910408  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 25887723 - 25887801
Alignment:
Q  210 aaagaaaacttacattggcatcaaagtcaaaacgatccacacctttccaattatccaaatcataggcagtaaagtgttt 288  Q
    ||||||||||||| |||||||| ||  || |||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  25887723 aaagaaaacttactttggcatcgaaaacataacgattcacacccttccaattttccaaatcataggcagtaaagtgttt 25887801  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25957610 - 25957559
Alignment:
Q  1 caaaaatccaaaagtttaacaatataagaaacacaccaataattaataagat 52  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  25957610 caaaaatccaaaagtttaacaatataagaaacacatcaataatgaataagat 25957559  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 25957550 - 25957503
Alignment:
Q  81 aactctaaaataaaaagtattttaacaactatattgcattttcttaat 128  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  25957550 aactctaaaataaaaagtcttttgacaactatattgcattttcttaat 25957503  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25957741 - 25957693
Alignment:
Q  4 aaatccaaaagtttaacaatataagaaacacaccaataattaataagat 52  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  25957741 aaatccaaaagtttgataatataagaaacacaccaatagttaataagat 25957693  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25957872 - 25957824
Alignment:
Q  4 aaatccaaaagtttaacaatataagaaacacaccaataattaataagat 52  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  25957872 aaatccaaaagtttgataatataagaaacacaccaatagttaataagat 25957824  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25957997 - 25957955
Alignment:
Q  10 aaaagtttaacaatataagaaacacaccaataattaataagat 52  Q
    |||||||| | ||||||||||||||||||||| ||||||||||    
T  25957997 aaaagtttgataatataagaaacacaccaatagttaataagat 25957955  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 39088824 - 39088761
Alignment:
Q  227 gcatcaaagtcaaaacgatccacacctttccaattatccaaatcataggcagtaaagtgtttac 290  Q
    |||| ||||| ||| ||||||||||| ||||||||||| | |||||| || |||||||||||||    
T  39088824 gcattaaagtgaaagcgatccacaccattccaattatcgagatcataagcggtaaagtgtttac 39088761  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 6563385 - 6563332
Alignment:
Q  148 tttcttaatctatgcgtaaaaatttaaaac-acatttattttaaaacggatgga 200  Q
    ||||||||| |||||||||||| || |||| ||||| |||||||||||||||||    
T  6563385 tttcttaatatatgcgtaaaaaatttaaacgacattcattttaaaacggatgga 6563332  T

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