View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_high_23 (Length: 212)
Name: NF18072_high_23
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 45122273 - 45122166
Alignment:
| Q |
10 |
agtgagatgaacttagtattgatttataatatcaacactcgggcacttgaatattgctcaaaaagaatgttagtgtagagattttattaccgagtaaaaa |
109 |
Q |
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| T |
45122273 |
agtgagaagaacttagcattgatttataatatcaacactcggccacttgaatattgctcaaaaagaatgttagtgtagagattttattactgagtaaaaa |
45122174 |
T |
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| Q |
110 |
atatgtat |
117 |
Q |
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| T |
45122173 |
atatgtat |
45122166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 45122085 - 45122028
Alignment:
| Q |
103 |
gtaaaaaatatgtattcagtgtctgatgcaaaaactatttatactatattttttataa |
160 |
Q |
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| T |
45122085 |
gtaaaaaatatgtattcagtgtctgatgcaaaaactatttatactatattttttataa |
45122028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 45121999 - 45121965
Alignment:
| Q |
155 |
ttataagcccaacattttttacccttgatcattct |
189 |
Q |
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| T |
45121999 |
ttataagcccaacattttttacccttgatcattct |
45121965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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