View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_1 (Length: 840)
Name: NF18072_low_1
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 400 - 830
Target Start/End: Original strand, 19194977 - 19195407
Alignment:
| Q |
400 |
tagaagaagagccgtctggtaatgctgcattgcaagcttgtcctgtttatgttgcggctgttgacttatcatgtaagattaattggtttttgtatcattt |
499 |
Q |
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| T |
19194977 |
tagaagaagagtcgtctggtaatgctgcattgcaagcttgtcctgtttatgttgcggctgttgacttatcatgtaagattaattggtttttgtatcattt |
19195076 |
T |
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| Q |
500 |
tagtgcttatgcatgtgatcattgtgatgataataggatggtttagtgaggttttgcatctctgtagcaccggcacttatgatcgaagacgtgatacatg |
599 |
Q |
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| T |
19195077 |
tagtgcttatgcatgtgatcattgtgatgataataggatggtttagtgaggttttgaatctctgtagcaccggcacttatgatcgaagacgtgacacatg |
19195176 |
T |
|
| Q |
600 |
tgattataccgaattacatcattttctcaaattattattggtgtgacatgttagtttcgtgtacaatgtttgtgcccatgcttcatagttttgcacttgt |
699 |
Q |
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| T |
19195177 |
tgattataccgaattacgtcattttctcaaattattattggtgtgacatgttagtttcgtgcacaatgtttgtgcccatgcttcatagttttgcacttgt |
19195276 |
T |
|
| Q |
700 |
tttgttggttcattgctttgtctgtgtccaagcctgtcatatttatgttgcttatgctgccttgtcgtgtaagattaattggtttttgcatccaattatt |
799 |
Q |
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| T |
19195277 |
tttgttggttcattgctttgtctgtgtccaagcctgtcatatttatgttgcttatgctgacttgttgtgtaagattaattggtttttgcatccaattatt |
19195376 |
T |
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| Q |
800 |
gcatgttcatgtgctaattgtggttgatgat |
830 |
Q |
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| T |
19195377 |
gcatgttcatgtgctaattgtggttgatgat |
19195407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 19194578 - 19194905
Alignment:
| Q |
1 |
cccgcttcccattggacaccgacgcacgcgaagcttccggcctattatggggggtaaccgtcgcccccttcgccgccgtcgacgaaaacaaccaatcacc |
100 |
Q |
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| T |
19194578 |
cccgcttcccattggacaccgacgcacgcgaagcttccggcctattatggggagtaaccgtcgcccccttcgccgccgtcgacgaaaacaaccaatcacc |
19194677 |
T |
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| Q |
101 |
ggtatacggatccagcggcgagcttttaccccggtgcgagaattgctgggcgtacttcaacacctactgtgatctcgaacaatggtcgtggggttgttct |
200 |
Q |
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| T |
19194678 |
ggtatacggatccagcggcgagcttttaccccggtgcgagaattgctgggcgtacttcaacacctactgtgatctcgaacaatggtcgtgggggtgttct |
19194777 |
T |
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| Q |
201 |
ctctgcgggaatctcaatggtctaacttctgaagctattgagcgttattctcgtccgcaatcatgtgctgaaatgatgtcttcgtttgtagatcttgaat |
300 |
Q |
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| T |
19194778 |
ctctgcgggaatctcaatggtctaacttctgaagctattgagcgttattctcgtccgcaatcttgtgctgaaatgatgtcttcgtttgtagatcttgaat |
19194877 |
T |
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| Q |
301 |
tgccgcagggtaagggttaagggttgcg |
328 |
Q |
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| T |
19194878 |
tgccgcagggtaagggttaagggttgcg |
19194905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 11107758 - 11107832
Alignment:
| Q |
105 |
tacggatccagcggcgagcttttaccccggtgcgagaattgctgggcgtacttcaacacctactgtgatctcgaa |
179 |
Q |
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||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||| || |||||| |
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| T |
11107758 |
tacggatacagcggcgagcttttaccccgatgagagaattgcagggcgtacttcaacacgtactgcgaactcgaa |
11107832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 595 - 643
Target Start/End: Complemental strand, 30013244 - 30013196
Alignment:
| Q |
595 |
acatgtgattataccgaattacatcattttctcaaattattattggtgt |
643 |
Q |
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| T |
30013244 |
acatgtgattatattgaattacgtcattttctcatattattattggtgt |
30013196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 650
Target Start/End: Original strand, 1893394 - 1893435
Alignment:
| Q |
610 |
gaattacatcattttctcaaattattattggtg-tgacatgt |
650 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||| |
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| T |
1893394 |
gaattatatcattttctcaaattattattggtgatgacatgt |
1893435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 654
Target Start/End: Original strand, 4859146 - 4859183
Alignment:
| Q |
618 |
tcattttctcaaattattattggtgt-gacatgttagt |
654 |
Q |
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| T |
4859146 |
tcattttctcaaattattattggtgtcgacatgttagt |
4859183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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