View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18072_low_12 (Length: 359)

Name: NF18072_low_12
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18072_low_12
NF18072_low_12
[»] chr5 (6 HSPs)
chr5 (146-342)||(32268629-32268825)
chr5 (67-342)||(41900181-41900456)
chr5 (59-178)||(32268817-32268936)
chr5 (60-127)||(41886279-41886346)
chr5 (240-276)||(38266354-38266390)
chr5 (145-194)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (134-201)||(15091347-15091414)
chr7 (136-198)||(10168806-10168868)
chr7 (136-198)||(10176331-10176393)
chr7 (73-114)||(10616209-10616250)
[»] chr4 (21 HSPs)
chr4 (140-201)||(2460597-2460658)
chr4 (122-195)||(2367656-2367729)
chr4 (140-189)||(2547544-2547593)
chr4 (143-195)||(2381378-2381430)
chr4 (141-201)||(6007665-6007725)
chr4 (137-195)||(566629-566687)
chr4 (142-195)||(2525763-2525816)
chr4 (144-189)||(12124836-12124881)
chr4 (144-189)||(12126892-12126937)
chr4 (136-201)||(55907434-55907499)
chr4 (143-195)||(2486313-2486365)
chr4 (143-195)||(5035628-5035680)
chr4 (253-336)||(1524189-1524274)
chr4 (155-201)||(1547469-1547515)
chr4 (137-187)||(2376228-2376278)
chr4 (143-181)||(2380123-2380161)
chr4 (241-278)||(532899-532936)
chr4 (140-189)||(2472104-2472153)
chr4 (250-323)||(21833142-21833215)
chr4 (134-174)||(8445271-8445311)
chr4 (154-194)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (134-201)||(513426-513493)
chr3 (136-187)||(51763146-51763197)
[»] chr1 (5 HSPs)
chr1 (250-342)||(9581784-9581878)
chr1 (146-195)||(15837967-15838016)
chr1 (250-342)||(9587355-9587448)
chr1 (136-195)||(33161439-33161498)
chr1 (143-187)||(52085556-52085600)
[»] chr6 (5 HSPs)
chr6 (135-195)||(14821628-14821688)
chr6 (143-195)||(6395781-6395833)
chr6 (143-191)||(6427432-6427480)
chr6 (155-189)||(6437161-6437195)
chr6 (153-195)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (136-195)||(32152212-32152271)
chr8 (143-189)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (136-201)||(1036176-1036241)
chr2 (136-189)||(44575177-44575230)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 32268825 - 32268629
Alignment:
Q  146 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatccaacccttcctcttcttcctactctctt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctctct--cacagtctatgatccaacccttccttttcttcctactctctt 32268728  T
Q  246 gcgtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaa--tctcgttttccattgaaactcac 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  32268727 gcgtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcac 32268629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 41900181 - 41900456
Alignment:
Q  67 ttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacag 166  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | |||||||||||||||  ||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  167 ttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatccaacccttcctcttcttcctactctcttgcgtagattcaccaacctcac 266  Q
    || |||||||||||||||  ||||||||| ||||||  ||| ||| ||||| ||| || ||| |||||||||||||||| | |||||| ||||| |||||    
T  41900281 tttctctccatcaccaacactcttcgattctctctt--acaatctgtgatcaaactctcccttttcttcctactctctttcatagatttaccaatctcac 41900378  T
Q  267 ctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaa--tctcgttttccattgaaactcac 342  Q
    ||||||| | |||||| | ||| | ||||| |||||||| ||||| |||||||  |||| ||||||||||||||||||    
T  41900379 ctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcac 41900456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 32268936 - 32268817
Alignment:
Q  59 tcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 158  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268936 tcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 32268837  T
Q  159 ccaaacagttactctccatc 178  Q
    ||||||||||||||||||||    
T  32268836 ccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 41886279 - 41886346
Alignment:
Q  60 caatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 127  Q
    ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886279 caatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 38266354 - 38266390
Alignment:
Q  240 tctcttgcgtagattcaccaacctcacctccctcgac 276  Q
    |||||| ||||||||||||||||||||||||||||||    
T  38266354 tctcttccgtagattcaccaacctcacctccctcgac 38266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  145 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 194  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  134 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 198  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 198  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  73 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 114  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  140 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  122 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  140 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 189  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  141 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  137 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  142 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  144 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 189  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  144 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 189  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 1524189 - 1524274
Alignment:
Q  253 ttcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaa--tctcgttttccattgaa 336  Q
    |||||||||||||| |||||||| ||| |||| | | |  || | ||||||||||||||||| ||||  |||||||||||||||||    
T  1524189 ttcaccaacctcacttccctcgatctcacgtggtacgatcgtgatctcaacaagcttctctgccaaatctctcgttttccattgaa 1524274  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  155 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  137 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 187  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcacc 181  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 532936 - 532899
Alignment:
Q  241 ctcttgcgtagattcaccaacctcacctccctcgacct 278  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  532936 ctcttccgtagattcaccaacctcacctcccttgacct 532899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  140 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 189  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 21833142 - 21833215
Alignment:
Q  250 agattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctc 323  Q
    |||||||||||||| ||||||||  |||||||  | ||| ||||| | |||||||| |||||| ||||||||||    
T  21833142 agattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtcaaatctc 21833215  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  134 tgcttgaaatctctctccatcgtctccaaacagttactctc 174  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  154 cgtctccaaacagttactctccatcaccaaccgtcttcgat 194  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  134 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 187  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 9581878 - 9581784
Alignment:
Q  250 agattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctc--gttttccattgaaactcac 342  Q
    |||||||||||||||||||||||||||||| |||| | ||  ||||| |||||| ||||||| | |||| ||||  |||| ||||||||||||||    
T  9581878 agattcaccaacctcacctccctcgacctcacgtggtacagaggtaacctcaacgagcttctgtatcaagtctcttgtttcccattgaaactcac 9581784  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  146 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 9587448 - 9587355
Alignment:
Q  250 agattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctc--gttttccattgaaactcac 342  Q
    |||||||||||||||||||||||||||||| || | | ||| ||| | |||||| ||||||| | |||| ||||  |||| ||||||||||||||    
T  9587448 agattcaccaacctcacctccctcgacctcacg-gctacaaaggtgacctcaacgagcttctatctcaagtctcttgtttcccattgaaactcac 9587355  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 187  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  135 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 191  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  155 gtctccaaacagttactctccatcaccaaccgtct 189  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  153 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 195  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  143 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 189  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 201  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  136 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 189  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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