View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18072_low_14 (Length: 342)
Name: NF18072_low_14
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18072_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 10923702 - 10924016
Alignment:
| Q |
9 |
caagtgtttatgccactaaataaactcaaataagttgatataaataggtatatgtaatactaataagtgtnnnnnnntcatttttctttaaataggtaat |
108 |
Q |
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| T |
10923702 |
caagtgtttatgccactaaataaactcaaataagtcgatataaataggtatatgtaatactaataagtgtaaaaaaaacatttttctttaaataggtaat |
10923801 |
T |
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| Q |
109 |
actaattaataagtctnnnnnnnntcatttttctttaaatttgttaaatattttatggaccagaaaaaggattacatttttaaaaactgaccttggatat |
208 |
Q |
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| T |
10923802 |
actaat----aagtctaaaaaaaatcatttttctttaaatttgttaaatattttttggaccaaaaaaaggattaaatttttaaaaactgaccttggatat |
10923897 |
T |
|
| Q |
209 |
ggtgaccctttgattggtttttgaccatatttcctccatgcccatatgtctgatgagagcttctcagcttgcacttcacaaaccttcttatgctgaatct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10923898 |
ggtgaccctttgattggtttttgaccatatttcctccatgcccatatgtctgatgagagcttctcagcttgcacttcacaaaccttcttatgctgaatct |
10923997 |
T |
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| Q |
309 |
tcctataattagcaaaaac |
327 |
Q |
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||||||||||||||||||| |
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| T |
10923998 |
tcctataattagcaaaaac |
10924016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 29998944 - 29998826
Alignment:
| Q |
198 |
accttggatatggtgaccctttgattggtttttgaccatatttcctccatgcccatatgtctgatgagagcttctcagcttgcacttcacaaaccttctt |
297 |
Q |
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| T |
29998944 |
accttggatatggtgacccttttataggtttttgtccatatttcctccatgcccatatatctgaagagagactctcaactggtacttgacaaactttctt |
29998845 |
T |
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| Q |
298 |
atgctgaatcttcctataa |
316 |
Q |
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| | ||| | ||||||||| |
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| T |
29998844 |
aagttgatttttcctataa |
29998826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 44850120 - 44850072
Alignment:
| Q |
198 |
accttggatatggtgaccctttgattggtttttgaccatatttcctcca |
246 |
Q |
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| T |
44850120 |
accttgggtatggagagcctttgattggtttttgtccatatttcctcca |
44850072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 42568624 - 42568665
Alignment:
| Q |
212 |
gaccctttgattggtttttgaccatatttcctccatgcccat |
253 |
Q |
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| T |
42568624 |
gaccctttgataggtttttgtccgtatttcctccatgcccat |
42568665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 8786851 - 8786797
Alignment:
| Q |
198 |
accttggatatggtgaccctttgattggtttttgaccatatttcctccatgccca |
252 |
Q |
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||||||||| |||||||||||| || |||||||| |||||||||||||| ||||| |
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| T |
8786851 |
accttggatgtggtgaccctttaatgggtttttgcccatatttcctccacgccca |
8786797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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