View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18072_low_17 (Length: 314)

Name: NF18072_low_17
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18072_low_17
NF18072_low_17
[»] chr5 (4 HSPs)
chr5 (79-252)||(37220634-37220811)
chr5 (79-260)||(30510540-30510726)
chr5 (79-260)||(30550880-30551066)
chr5 (221-258)||(35123202-35123239)
[»] chr7 (3 HSPs)
chr7 (79-260)||(43571614-43571799)
chr7 (79-258)||(37724382-37724565)
chr7 (145-258)||(5021068-5021180)
[»] chr4 (3 HSPs)
chr4 (79-256)||(42249886-42250068)
chr4 (85-222)||(35957513-35957654)
chr4 (85-258)||(20668952-20669130)
[»] chr2 (1 HSPs)
chr2 (18-69)||(40150048-40150099)
[»] chr3 (2 HSPs)
chr3 (115-258)||(9163625-9163767)
chr3 (221-258)||(19824291-19824328)
[»] scaffold0308 (1 HSPs)
scaffold0308 (109-258)||(16159-16306)
[»] chr6 (2 HSPs)
chr6 (85-258)||(33804248-33804425)
chr6 (196-252)||(4474285-4474341)
[»] chr1 (6 HSPs)
chr1 (115-175)||(16874070-16874130)
chr1 (222-258)||(39730293-39730329)
chr1 (218-258)||(44929840-44929880)
chr1 (86-176)||(48321744-48321839)
chr1 (229-258)||(39730237-39730266)
chr1 (196-256)||(41503399-41503459)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 37220634 - 37220811
Alignment:
Q  79 aacacgtcaaaatggaattatattaacac----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaa 174  Q
    ||||| |||||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37220634 aacacatcaaaatggaattatattaacacaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacaaagtccaa 37220733  T
Q  175 aacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaa 252  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37220734 aacaaagaacaaaaaacaggaattaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccataaa 37220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 30510726 - 30510540
Alignment:
Q  79 aacacgtcaaaatggaattatattaacac-----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtcca 173  Q
    ||||| |||||||||||||||||||||||     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  30510726 aacacatcaaaatggaattatattaacacaaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacagagtcca 30510627  T
Q  174 aaacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaacacg 260  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30510626 acacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatatgagtaccataaacaaacacg 30510540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 30551066 - 30550880
Alignment:
Q  79 aacacgtcaaaatggaattatattaacac-----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtcca 173  Q
    ||||| |||||||||||||||||||||||     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  30551066 aacacatcaaaatggaattatattaacacaaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacagagtcca 30550967  T
Q  174 aaacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaacacg 260  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30550966 acacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatatgagtaccataaacaaacacg 30550880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 35123239 - 35123202
Alignment:
Q  221 aggactagaccaccacatctgagtaccataaacaaaca 258  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  35123239 aggacttgaccaccacatctaagtaccataaacaaaca 35123202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 43571614 - 43571799
Alignment:
Q  79 aacacgtcaaaatggaattatattaacac----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaa 174  Q
    ||||| |||||||||||||| ||||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  43571614 aacacatcaaaatggaattaaattaacacaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacaaagtctaa 43571713  T
Q  175 aacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaacacg 260  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43571714 aacaaagaacaaaaagcagggattaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccaaaaacaaacacg 43571799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 258
Target Start/End: Complemental strand, 37724565 - 37724382
Alignment:
Q  79 aacacgtcaaaatggaattatattaacac----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaa 174  Q
    ||||| |||||||||||||||||||||||    |||||  ||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||    
T  37724565 aacacatcaaaatggaattatattaacacaacgtagcagtttccaagcacaaggtatgcttaggattctgctacaagatacaaaatgttacatagtccaa 37724466  T
Q  175 aacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaaca 258  Q
    |||||||||||||| ||||  ||||  ||||||||| | |||||| |||||| |||||||||||||||||||||||||||||||    
T  37724465 aacaaagaacaaaacacagtgattatgcaatgcctagatataacataggacttgaccaccacatctgagtaccataaacaaaca 37724382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 5021180 - 5021068
Alignment:
Q  145 ctacaagatacaaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagt 244  Q
    |||||||||||||| ||||||||||||||||| || ||  ||  | |||   ||||||||| |||| |||||  | |||||| |||||||||||||||||    
T  5021180 ctacaagatacaaagtgttacaaagtccaaaataa-gagaaactagcagtggttaaccaattcctaaacatattataggacttgaccaccacatctgagt 5021082  T
Q  245 accataaacaaaca 258  Q
    ||||||||||||||    
T  5021081 accataaacaaaca 5021068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 79 - 256
Target Start/End: Complemental strand, 42250068 - 42249886
Alignment:
Q  79 aacacgtcaaaatggaattatattaacac----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaa-gtcca 173  Q
    ||||| ||||||| |||||||||||||||    |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  42250068 aacacatcaaaatagaattatattaacacaacatagcttattccaagcacaagatatgcctagagttctactacaagatacaaaatgttacaaaagtcca 42249969  T
Q  174 aaacaaagaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaa 256  Q
    ||||||||||||||||  ||| |||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||    
T  42249968 aaacaaagaacaaaaagtagggattaaccaatacctaaacataacaaatgattagaccaccacatctgagtaccataaacaaa 42249886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 35957654 - 35957513
Alignment:
Q  85 tcaaaatggaattatattaacac----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaaacaaa 180  Q
    |||||||||||||||||||||||    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35957654 tcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacatagtccaaaacaaa 35957555  T
Q  181 gaacaaaaaacaggaattaaccaatgcctacacataacaaag 222  Q
    ||||||||| |||| ||||||||||||||| |||||||||||    
T  35957554 gaacaaaaagcagggattaaccaatgcctagacataacaaag 35957513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 20668952 - 20669130
Alignment:
Q  85 tcaaaatggaattatattaacac-----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaaacaa 179  Q
    |||||||||||||||||||||||     |||||| ||||||||||||| | ||||||| |  || |||||||||||||| | ||||| |||| |||| ||    
T  20668952 tcaaaatggaattatattaacacaacagtagcattttccaagcacaaggtgtgcctaggaaactactacaagatacaaagtcttacagagtctaaaataa 20669051  T
Q  180 agaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaaca 258  Q
    |    |   | |||  ||||  ||| ||||| ||||  || |||||| |||||||||||||||||||||||||||||||    
T  20669052 atcgaatctagcagtgattagtcaaagcctaaacatgtcataggacttgaccaccacatctgagtaccataaacaaaca 20669130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 40150099 - 40150048
Alignment:
Q  18 atagttgagttcaaagaggattcaaccggtccgatttttctccctgcatata 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40150099 atagttgagttcaaagaggattcaaccggtccgatttttctccctgcatata 40150048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 9163767 - 9163625
Alignment:
Q  115 ttccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctacaca 214  Q
    ||||||||| ||| | ||||||| |  || |||||||||||||| ||||||||||||||||| || ||  |   | ||| | ||| ||||| |||| |||    
T  9163767 ttccaagcataaggtgtgcctaggaaactactacaagatacaaagtgttacaaagtccaaaataa-gagaatctagcagtagttagccaattcctaaaca 9163669  T
Q  215 taacaaaggactagaccaccacatctgagtaccataaacaaaca 258  Q
    |   |||||||| |||||||||||||||||||||||||||||||    
T  9163668 tgttaaaggacttgaccaccacatctgagtaccataaacaaaca 9163625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 19824328 - 19824291
Alignment:
Q  221 aggactagaccaccacatctgagtaccataaacaaaca 258  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  19824328 aggacttgaccaccacatctgagtatcataaacaaaca 19824291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 16159 - 16306
Alignment:
Q  109 agcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcc 208  Q
    ||||| ||||||||||| | | |||||||||  || |||||||||||||| ||||||||||||||||| || ||  |   | |||   ||| ||||| ||    
T  16159 agcattttccaagcacagg-tgtgcctagaaaactactacaagatacaaagtgttacaaagtccaaaataa-gagaatctagcagtggttagccaattcc 16256  T
Q  209 tacacataacaaaggactagaccaccacatctgagtaccataaacaaaca 258  Q
    || ||||  || |||||| |||||||||||||||||||||||||||||||    
T  16257 taaacatgtcataggacttgaccaccacatctgagtaccataaacaaaca 16306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 33804248 - 33804425
Alignment:
Q  85 tcaaaatggaattatattaacac-----tagcatattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaaacaa 179  Q
    |||||||||||||||||||||||     |||||  ||||||||||||| ||||||||| |  ||| |||||||||||||  |||||| ||||||||| ||    
T  33804248 tcaaaatggaattatattaacacaacggtagcaatttccaagcacaaggtatgcctaggaaactgttacaagatacaaagagttacagagtccaaaataa 33804347  T
Q  180 -agaacaaaaaacaggaattaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaaca 258  Q
     |||| | |  |  ||  ||| ||||| |||| |  |  || |||||| |||||||||||||||||||||||||||||||    
T  33804348 gagaatatagcattgg--ttagccaattcctaaaactgtcataggacttgaccaccacatctgagtaccataaacaaaca 33804425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 4474285 - 4474341
Alignment:
Q  196 attaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaa 252  Q
    |||| |||||||||| ||||  || |||||| ||||||||| |||||||||||||||    
T  4474285 attatccaatgcctaaacatgccataggacttgaccaccacctctgagtaccataaa 4474341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 16874130 - 16874070
Alignment:
Q  115 ttccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaa 175  Q
    ||||||||||||| | ||||||| |  || |||||||||||||| ||||||||||||||||    
T  16874130 ttccaagcacaaggtgtgcctaggaaactactacaagatacaaagtgttacaaagtccaaa 16874070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 39730329 - 39730293
Alignment:
Q  222 ggactagaccaccacatctgagtaccataaacaaaca 258  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39730329 ggacttgaccaccacatctgagtaccataaacaaaca 39730293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 44929840 - 44929880
Alignment:
Q  218 caaaggactagaccaccacatctgagtaccataaacaaaca 258  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  44929840 caaaggacttgaccaccacatctgagtaccaaaaacaaaca 44929880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 48321839 - 48321744
Alignment:
Q  86 caaaatggaattatattaacactag-----catattccaagcacaagatatgcctagaattctgctacaagatacaaaatgttacaaagtccaaaa 176  Q
    |||||||||||||||||||||| |      ||| ||||||||||||| | ||||||| |  || |||||||||||||| ||||||| |||||||||    
T  48321839 caaaatggaattatattaacacaacaacaacattttccaagcacaaggtgtgcctaggaaactactacaagatacaaagtgttacagagtccaaaa 48321744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 39730266 - 39730237
Alignment:
Q  229 accaccacatctgagtaccataaacaaaca 258  Q
    ||||||||||||||||||||||||||||||    
T  39730266 accaccacatctgagtaccataaacaaaca 39730237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 41503459 - 41503399
Alignment:
Q  196 attaaccaatgcctacacataacaaaggactagaccaccacatctgagtaccataaacaaa 256  Q
    ||||||||||||| | ||| | || |||||| ||||||||||||||||| ||| |||||||    
T  41503459 attaaccaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaa 41503399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University