View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18072_low_19 (Length: 296)

Name: NF18072_low_19
Description: NF18072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18072_low_19
NF18072_low_19
[»] chr6 (2 HSPs)
chr6 (1-284)||(20749826-20750109)
chr6 (1-284)||(20761838-20762115)
[»] chr1 (1 HSPs)
chr1 (9-114)||(34282769-34282874)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 20749826 - 20750109
Alignment:
Q  1 ttattctctccaaatcttgtcaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20749826 ttattctctccaaatcttgttaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcat 20749925  T
Q  101 tgtaaccaacaacaactgcacccttttgtttataacaaccaatttgaacacatttaacaatctcttcatgattcataaggttgcaatcaattaacacaaa 200  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20749926 tgtaaccaacaacaactgtacctttttgtttacaacaaccaatttgaacacatttaacaatctcttcatgatttataaggttgcaatcaattaacacaaa 20750025  T
Q  201 atcagctttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaacttgattagaagccgctcctaggatttt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20750026 atcagctttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaacttgattagaagccgctcctaggatttt 20750109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 20761838 - 20762115
Alignment:
Q  1 ttattctctccaaatcttgtcaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20761838 ttattctctccaaatcttgttaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcat 20761937  T
Q  101 tgtaaccaacaacaactgcacccttttgtttataacaaccaatttgaacacatttaacaatctcttcatgattcataaggttgcaatcaattaacacaaa 200  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20761938 tgtaaccaacaacaactgtacctttttgtttacaacaaccaatttgaacacatttaacaatctcttcatgattcatatggttgcaatcaattaacacaaa 20762037  T
Q  201 atcagctttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaacttgattagaagccgctcctaggatttt 284  Q
    ||||||||||||||||||||||||      |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  20762038 atcagctttgtttaacaccaataa------tgcttcttttccaatcatgaattggacttgattagaagctgctcctaggatttt 20762115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 34282874 - 34282769
Alignment:
Q  9 tccaaatcttgtcaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcattgtaacca 108  Q
    |||||||||||||||||| | ||||| |||||| || |  | |||||| ||||||||||| |||  ||| ||||||||  |||||||| ||||||| ||     
T  34282874 tccaaatcttgtcaccaaaagcccttctccaattggcaaaagttgagtctttgatccacatgataaccaagaccctttgcaactaaatccattgtacccc 34282775  T
Q  109 acaaca 114  Q
    ||||||    
T  34282774 acaaca 34282769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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